View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11022_low_29 (Length: 238)
Name: NF11022_low_29
Description: NF11022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11022_low_29 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 22 - 147
Target Start/End: Complemental strand, 39184791 - 39184666
Alignment:
| Q |
22 |
aggcggtttggcagcgtagttttggctctatcgttggcttgtgggtatattcttcgtggctgcttcttcggaatgctatggcggtgtggccgctttcctt |
121 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39184791 |
aggcggtttggcggcgtagttttggctctatcgttggcttgtgggtatattcttcgtggctgcttcttcggaatgctatggcgttgtggccgctttcctt |
39184692 |
T |
|
| Q |
122 |
ggagtctttcaactttgttgtcttgt |
147 |
Q |
| |
|
| |||||||||||||||||||||||| |
|
|
| T |
39184691 |
gaagtctttcaactttgttgtcttgt |
39184666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 146
Target Start/End: Original strand, 8730382 - 8730501
Alignment:
| Q |
27 |
gtttggcagcgtagttttggctctatcgttggcttgtgggtatattcttcgtggctgcttcttcggaatgctatggcggtgtggccgctttccttggagt |
126 |
Q |
| |
|
||||||||| |||||| || |||||||||||| | ||||||||||| | |||| ||| |||| |||||||||||| ||| | |||| |||||||| |
|
|
| T |
8730382 |
gtttggcagtgtagttctgtctctatcgttggttggtgggtatatttattgtggttgcctctttataatgctatggcgatgttgttgcttaccttggaga |
8730481 |
T |
|
| Q |
127 |
ctttcaactttgttgtcttg |
146 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
8730482 |
ctttcaactttgttgtcttg |
8730501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 25 - 147
Target Start/End: Original strand, 17032977 - 17033100
Alignment:
| Q |
25 |
cggtttggcagcgtagttttgg-ctctatcgttggcttgtgggtatattcttcgtggctgcttcttcggaatgctatggcggtgtggccgctttccttgg |
123 |
Q |
| |
|
||||||||||| |||||||| | |||||||| || |||||||| ||||| ||||||||||||||||||||||||||||| |||||| ||||||||| | |
|
|
| T |
17032977 |
cggtttggcagtgtagtttttgtctctatcgctgatttgtgggtttattcaacgtggctgcttcttcggaatgctatggcgatgtggctgctttccttag |
17033076 |
T |
|
| Q |
124 |
agtctttcaactttgttgtcttgt |
147 |
Q |
| |
|
|| | ||||||||||||||||||| |
|
|
| T |
17033077 |
agaccttcaactttgttgtcttgt |
17033100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 139
Target Start/End: Original strand, 42373640 - 42373752
Alignment:
| Q |
26 |
ggtttggcagcgtagttttggctctatcgttggcttgtgggtatattcttcgtggctgcttcttcggaatgctatggcggtgtggccgctttccttggag |
125 |
Q |
| |
|
|||||| | ||||||||||| ||||||| |||| |||||||||||||| |||||||||||||||||||||||||||| ||| || | ||||||||||| |
|
|
| T |
42373640 |
ggtttgacggcgtagttttgtctctatctttgg-ttgtgggtatattcactgtggctgcttcttcggaatgctatggcgatgttgctgatttccttggag |
42373738 |
T |
|
| Q |
126 |
tctttcaactttgt |
139 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
42373739 |
accttcaactttgt |
42373752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 146
Target Start/End: Complemental strand, 25505525 - 25505406
Alignment:
| Q |
27 |
gtttggcagcgtagttttggctctatcgttggcttgtgggtatattcttcgtggctgcttcttcggaatgctatggcggtgtggccgctttccttggagt |
126 |
Q |
| |
|
||||||||| |||||| || |||||||||||| | ||||||||||| | |||| ||| |||| |||||||||||| ||| | |||| |||||||| |
|
|
| T |
25505525 |
gtttggcagtgtagttctgtctctatcgttggttggtgggtatatttattgtggttgcctctttataatgctatggcgatgttgttgcttaccttggaga |
25505426 |
T |
|
| Q |
127 |
ctttcaactttgttgtcttg |
146 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
25505425 |
ctttcaactttgttgtcttg |
25505406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 146
Target Start/End: Complemental strand, 22885993 - 22885907
Alignment:
| Q |
60 |
ttgtgggtatattcttcgtggctgcttcttcggaatgctatggcggtgtggccgctttccttggagtctttcaactttgttgtcttg |
146 |
Q |
| |
|
|||||||||||||| | ||||||||||||||| ||||||| |||| ||| | ||||||||| ||| ||||||| ||||||||||| |
|
|
| T |
22885993 |
ttgtgggtatattcgttgtggctgcttcttcgaaatgctaaggcgatgttcctgctttccttagagactttcaatcttgttgtcttg |
22885907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 102
Target Start/End: Original strand, 12295557 - 12295612
Alignment:
| Q |
47 |
ctctatcgttggcttgtgggtatattcttcgtggctgcttcttcggaatgctatgg |
102 |
Q |
| |
|
|||||| | ||| |||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
12295557 |
ctctattgatggtttgtgggtatattcaccgtggctgcttcttcagaatgctatgg |
12295612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 132
Target Start/End: Complemental strand, 46699471 - 46699364
Alignment:
| Q |
26 |
ggtttggcagcgtagttt-tggctctatcgttggcttgtgggtatattcttcgtggctgcttcttcggaatgctatggcggtgtggccgctttccttgga |
124 |
Q |
| |
|
|||||||| ||||||||| | || ||||| ||| ||||||||| |||| | ||||||||||||||||||| ||||| | ||| || ||||||||| || |
|
|
| T |
46699471 |
ggtttggcggcgtagtttatatctttatcgctggtttgtgggtaaattcaccatggctgcttcttcggaatgttatggtgatgttgctgctttccttcga |
46699372 |
T |
|
| Q |
125 |
gtctttca |
132 |
Q |
| |
|
| |||||| |
|
|
| T |
46699371 |
gactttca |
46699364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University