View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11022_low_3 (Length: 636)

Name: NF11022_low_3
Description: NF11022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11022_low_3
NF11022_low_3
[»] chr6 (9 HSPs)
chr6 (25-354)||(21179162-21179492)
chr6 (346-529)||(21180441-21180623)
chr6 (530-581)||(16835118-16835169)
chr6 (530-581)||(17963515-17963566)
chr6 (532-583)||(5857045-5857096)
chr6 (535-581)||(22694347-22694393)
chr6 (532-580)||(11429046-11429094)
chr6 (80-148)||(12642546-12642614)
chr6 (532-578)||(19994344-19994390)
[»] chr3 (13 HSPs)
chr3 (526-581)||(757317-757372)
chr3 (529-581)||(14437649-14437701)
chr3 (530-581)||(18468300-18468351)
chr3 (530-578)||(18473097-18473145)
chr3 (530-581)||(23660446-23660497)
chr3 (530-581)||(23665078-23665129)
chr3 (530-581)||(27710016-27710067)
chr3 (530-581)||(7570172-7570223)
chr3 (530-581)||(12970765-12970816)
chr3 (535-581)||(32473106-32473152)
chr3 (530-581)||(20521049-20521100)
chr3 (546-581)||(55326864-55326899)
chr3 (119-155)||(32549588-32549624)
[»] chr4 (15 HSPs)
chr4 (525-581)||(5270375-5270431)
chr4 (530-581)||(8694801-8694852)
chr4 (530-581)||(31728323-31728374)
chr4 (530-581)||(5925761-5925812)
chr4 (530-581)||(31274602-31274653)
chr4 (530-581)||(37258822-37258873)
chr4 (530-581)||(2820879-2820930)
chr4 (530-581)||(37263520-37263571)
chr4 (530-575)||(31766953-31766998)
chr4 (530-578)||(29349164-29349212)
chr4 (530-581)||(19907376-19907427)
chr4 (80-155)||(21992749-21992824)
chr4 (530-581)||(33467960-33468011)
chr4 (527-581)||(13064767-13064821)
chr4 (525-577)||(6943854-6943906)
[»] chr8 (7 HSPs)
chr8 (530-581)||(33417599-33417650)
chr8 (530-581)||(40124851-40124902)
chr8 (533-581)||(15950528-15950576)
chr8 (530-583)||(17027171-17027225)
chr8 (530-583)||(17557663-17557717)
chr8 (530-581)||(28559074-28559125)
chr8 (533-581)||(28564258-28564306)
[»] chr5 (15 HSPs)
chr5 (530-581)||(26668366-26668417)
chr5 (530-581)||(26939963-26940014)
chr5 (530-581)||(29166930-29166981)
chr5 (530-578)||(7452846-7452894)
chr5 (530-581)||(36424726-36424777)
chr5 (530-581)||(37247756-37247807)
chr5 (530-581)||(39519473-39519524)
chr5 (530-581)||(39524112-39524163)
chr5 (530-575)||(36430610-36430655)
chr5 (530-577)||(6154389-6154436)
chr5 (530-577)||(37646012-37646059)
chr5 (530-581)||(20180112-20180163)
chr5 (530-577)||(37536894-37536941)
chr5 (544-581)||(23757135-23757172)
chr5 (544-581)||(23822591-23822628)
[»] chr2 (12 HSPs)
chr2 (530-581)||(9184374-9184425)
chr2 (530-581)||(18345504-18345555)
chr2 (529-580)||(19891463-19891514)
chr2 (530-581)||(1933966-1934017)
chr2 (530-577)||(17967921-17967968)
chr2 (530-577)||(17974308-17974355)
chr2 (530-581)||(30652002-30652053)
chr2 (529-581)||(40846477-40846529)
chr2 (530-581)||(9179683-9179734)
chr2 (530-582)||(24536973-24537025)
chr2 (532-581)||(20101609-20101658)
chr2 (530-581)||(12798018-12798069)
[»] chr1 (7 HSPs)
chr1 (530-581)||(10136413-10136464)
chr1 (530-581)||(26926686-26926737)
chr1 (530-581)||(25844844-25844895)
chr1 (530-575)||(8138683-8138728)
chr1 (530-578)||(39199733-39199781)
chr1 (80-134)||(38572334-38572388)
chr1 (533-581)||(11807288-11807336)
[»] scaffold0054 (1 HSPs)
scaffold0054 (533-581)||(30265-30313)
[»] scaffold0002 (1 HSPs)
scaffold0002 (530-581)||(5152-5203)
[»] chr7 (6 HSPs)
chr7 (530-581)||(4931311-4931362)
chr7 (534-581)||(2595858-2595905)
chr7 (530-581)||(21672292-21672343)
chr7 (530-575)||(26342299-26342344)
chr7 (538-575)||(44508261-44508298)
chr7 (530-581)||(3046661-3046712)
[»] scaffold0352 (1 HSPs)
scaffold0352 (530-581)||(8197-8248)
[»] scaffold0240 (1 HSPs)
scaffold0240 (525-580)||(5058-5113)


Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 25 - 354
Target Start/End: Original strand, 21179162 - 21179492
Alignment:
Q  25 tctcaaaggtgaaatatttatatggtcacaagcataaataagaatcaagtagacgcataacaatacattt-catttaattatggtaaaaataaaaattat 123  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  21179162 tctcaaaagtgaaatatttgtatggtcacaagcataaataagaatcaagtagacgcataacaatacattttcatttaattatggtaaaaataaatattat 21179261  T
Q  124 taaattgttttctatcgcacctttttcaagttttgtaaatttctcaaatgaactttatttgaggttgtgatcacacaagtggttttcgtctcaaagatag 223  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  21179262 taaattgttttctatcgcacctttttcaagttttgtaaatttcccaaatgaactttatttggggttgtgatcacacaaacggttttcgtctcaaagatag 21179361  T
Q  224 tgagtcgcccaacttccatgtttttgggtcttttgaagctgaaacaaatgtggatttccttatttgaannnnnnnaccaaaaagatgacatttttgtaag 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       | |||||||||||||||||||||||    
T  21179362 tgagtcgcccaacttccatgtttttgggtcttttgaagctgaaacaaatgtggatttccttatttgaatttttttatcaaaaagatgacatttttgtaag 21179461  T
Q  324 atcatannnnnnnacctcatgattcttaaaa 354  Q
    ||||||       ||||||||||||||||||    
T  21179462 atcatatttttttacctcatgattcttaaaa 21179492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 346 - 529
Target Start/End: Original strand, 21180441 - 21180623
Alignment:
Q  346 ttcttaaaatccattctcgttcaaatttgtctttggatggggaaaaccaannnnnnnaatagatttattcatttttatgagactaatattgttgtgtgta 445  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||       | ||||||||||| |||||||||||||||||||||||| ||||    
T  21180441 ttcttaaaatccattctcgttcaaatttgtctttggatggggaaagccaattttttta-tagatttattcctttttatgagactaatattgttgtctgta 21180539  T
Q  446 acatattggattctaagttgtggataggactagaaatgagttaagtggaattgaactcgtctcagctgtattcgactcgataag 529  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  21180540 acatattggattctaagttgtggataggactagaaatgagttaagtggaattgaactcgtctcagctttactcgactcgataag 21180623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 530 - 581
Target Start/End: Original strand, 16835118 - 16835169
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  16835118 tgttggaacattgatgtgatgttggatgaaaaattgaaagattaaacaccaa 16835169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 530 - 581
Target Start/End: Original strand, 17963515 - 17963566
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  17963515 tgtttgaacattgatgtgatgttggatgaaaaattggaagattaaacaccaa 17963566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 532 - 583
Target Start/End: Complemental strand, 5857096 - 5857045
Alignment:
Q  532 ttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaata 583  Q
    ||||||||||  |||||||||||| | |||||||||||||||||||||||||    
T  5857096 ttggaacattagtgtgatgttggaagaaaaattggaagattaaacaccaata 5857045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 535 - 581
Target Start/End: Original strand, 22694347 - 22694393
Alignment:
Q  535 gaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||||||| |||||||||||| | |||||||||||||||||||||||    
T  22694347 gaacattggtgtgatgttggaagaaaaattggaagattaaacaccaa 22694393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 532 - 580
Target Start/End: Complemental strand, 11429094 - 11429046
Alignment:
Q  532 ttggaacattgatgtgatgttggatggaaaattggaagattaaacacca 580  Q
    |||||||||||||||  | ||||||| ||||||||||||||||||||||    
T  11429094 ttggaacattgatgtacttttggatgaaaaattggaagattaaacacca 11429046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 12642546 - 12642614
Alignment:
Q  80 cataacaatacatttcatttaattatggtaaaaataaaaattattaaattgttttctatcgcacctttt 148  Q
    ||||||||||||||| |||| |||||   ||||| | | |||||||||||||||||||||| |||||||    
T  12642546 cataacaatacattttattttattatttcaaaaacacacattattaaattgttttctatcgtacctttt 12642614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 532 - 578
Target Start/End: Original strand, 19994344 - 19994390
Alignment:
Q  532 ttggaacattgatgtgatgttggatggaaaattggaagattaaacac 578  Q
    ||||| ||||| |||||||||||| | ||||||||||||||||||||    
T  19994344 ttggatcattggtgtgatgttggaagaaaaattggaagattaaacac 19994390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 526 - 581
Target Start/End: Original strand, 757317 - 757372
Alignment:
Q  526 taagtgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  757317 taagtgttggaacattgatgtgatgttggatgaaaaattggaagattaaacaccaa 757372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 529 - 581
Target Start/End: Original strand, 14437649 - 14437701
Alignment:
Q  529 gtgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14437649 gtgttggaacattgatgtgatgttggatgaaaaattggaagattaaacaccaa 14437701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 530 - 581
Target Start/End: Complemental strand, 18468351 - 18468300
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18468351 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaacaccaa 18468300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 530 - 578
Target Start/End: Complemental strand, 18473145 - 18473097
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacac 578  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  18473145 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaacac 18473097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 530 - 581
Target Start/End: Original strand, 23660446 - 23660497
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  23660446 tgttggaacattgatgtgatgttggatgaaaaattgaaagattaaacaccaa 23660497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 530 - 581
Target Start/End: Original strand, 23665078 - 23665129
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  23665078 tgttggaacattgatgtgatgttggatgaaaaattgaaagattaaacaccaa 23665129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 530 - 581
Target Start/End: Complemental strand, 27710067 - 27710016
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  27710067 tgttggaacattgatgtgatgttgaatgaaaaattggaagattaaacaccaa 27710016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 530 - 581
Target Start/End: Original strand, 7570172 - 7570223
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||||||||||| ||||||||||||||| ||||||| |||||||||||||||    
T  7570172 tgttggaacattaatgtgatgttggatgaaaaattgaaagattaaacaccaa 7570223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 530 - 581
Target Start/End: Original strand, 12970765 - 12970816
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    ||||||||||||||| |||||||||||| ||||| |||||||||||||||||    
T  12970765 tgttggaacattgatatgatgttggatgaaaaatcggaagattaaacaccaa 12970816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 535 - 581
Target Start/End: Original strand, 32473106 - 32473152
Alignment:
Q  535 gaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||    
T  32473106 gaacattgatgtgatattggatgaaaaattggaagattaaacaccaa 32473152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 530 - 581
Target Start/End: Complemental strand, 20521100 - 20521049
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    ||||||||||||  |||||||||||| | |||||||||||||||||||||||    
T  20521100 tgttggaacattagtgtgatgttggaagaaaaattggaagattaaacaccaa 20521049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 546 - 581
Target Start/End: Complemental strand, 55326899 - 55326864
Alignment:
Q  546 tgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||||||||||| |||||||||||||||||||||||    
T  55326899 tgatgttggatgaaaaattggaagattaaacaccaa 55326864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 119 - 155
Target Start/End: Original strand, 32549588 - 32549624
Alignment:
Q  119 attattaaattgttttctatcgcacctttttcaagtt 155  Q
    ||||||||||||||||||||  |||||||||||||||    
T  32549588 attattaaattgttttctatttcacctttttcaagtt 32549624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 525 - 581
Target Start/End: Original strand, 5270375 - 5270431
Alignment:
Q  525 ataagtgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5270375 ataattgttggaacattgatgtgatgttggatgaaaaattggaagattaaacaccaa 5270431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 530 - 581
Target Start/End: Complemental strand, 8694852 - 8694801
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8694852 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaacaccaa 8694801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 530 - 581
Target Start/End: Original strand, 31728323 - 31728374
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31728323 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaacaccaa 31728374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 530 - 581
Target Start/End: Original strand, 5925761 - 5925812
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  5925761 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaataccaa 5925812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 530 - 581
Target Start/End: Complemental strand, 31274653 - 31274602
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  31274653 tgttggaacattgatgtgatgttggatgaaaaattgaaagattaaacaccaa 31274602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 530 - 581
Target Start/End: Original strand, 37258822 - 37258873
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  37258822 tgttggaacattgatgtgatgttggatgaaaaattgaaagattaaacaccaa 37258873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 530 - 581
Target Start/End: Complemental strand, 2820930 - 2820879
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    ||||||||||||| ||||| |||||| |||||||||||||||||||||||||    
T  2820930 tgttggaacattggtgtgaagttggaaggaaaattggaagattaaacaccaa 2820879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 530 - 581
Target Start/End: Original strand, 37263520 - 37263571
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    ||||||||||||||||||||||| |||| ||||||| |||||||||||||||    
T  37263520 tgttggaacattgatgtgatgtttgatgaaaaattgaaagattaaacaccaa 37263571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 530 - 575
Target Start/End: Complemental strand, 31766998 - 31766953
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaa 575  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||    
T  31766998 tgttggaacattgatgtgatgttggatgaaaaattgaaagattaaa 31766953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 530 - 578
Target Start/End: Original strand, 29349164 - 29349212
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacac 578  Q
    ||||||||||||| |||||||||||| |||||| |||||||||||||||    
T  29349164 tgttggaacattggtgtgatgttggaaggaaaactggaagattaaacac 29349212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 530 - 581
Target Start/End: Complemental strand, 19907427 - 19907376
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    ||||||||||||| |||||||||||| | ||||||| |||||||||||||||    
T  19907427 tgttggaacattggtgtgatgttggaagaaaaattgaaagattaaacaccaa 19907376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 80 - 155
Target Start/End: Complemental strand, 21992824 - 21992749
Alignment:
Q  80 cataacaatacatttcatttaattatggtaaaaataaaaattattaaattgttttctatcgcacctttttcaagtt 155  Q
    ||||||||||||||| ||||||||| |  ||||||| | |||||||||||||||| ||| | |||||||| |||||    
T  21992824 cataacaatacattttatttaattaagtgaaaaatacacattattaaattgttttatattgtaccttttttaagtt 21992749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 530 - 581
Target Start/End: Original strand, 33467960 - 33468011
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    ||||||||||||  |||||||||||| | ||||||| |||||||||||||||    
T  33467960 tgttggaacattagtgtgatgttggaagaaaaattgaaagattaaacaccaa 33468011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 527 - 581
Target Start/End: Original strand, 13064767 - 13064821
Alignment:
Q  527 aagtgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||||||||||||||| |||||||||||| | |||||||||| | |||| |||||    
T  13064767 aagtgttggaacattggtgtgatgttggaagaaaaattggaaaaataaataccaa 13064821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 525 - 577
Target Start/End: Complemental strand, 6943906 - 6943854
Alignment:
Q  525 ataagtgttggaacattgatgtgatgttggatggaaaattggaagattaaaca 577  Q
    |||| ||||| ||||||  |||||||||||| | |||||||||||||||||||    
T  6943906 ataactgttgcaacattagtgtgatgttggaagaaaaattggaagattaaaca 6943854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 530 - 581
Target Start/End: Complemental strand, 33417650 - 33417599
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33417650 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaacaccaa 33417599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 530 - 581
Target Start/End: Original strand, 40124851 - 40124902
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  40124851 tgttggaacattgatgtgatgttggatgaaaaattgaaagattaaacaccaa 40124902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 533 - 581
Target Start/End: Original strand, 15950528 - 15950576
Alignment:
Q  533 tggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  15950528 tggaacattgatgtgatgttggatgaaaaattggaagactaaacaccaa 15950576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 530 - 583
Target Start/End: Complemental strand, 17027225 - 17027171
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaa-ttggaagattaaacaccaata 583  Q
    |||||||||||| ||||||||||||||| |||| |||||||||||||||||||||    
T  17027225 tgttggaacattaatgtgatgttggatgaaaaaattggaagattaaacaccaata 17027171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 530 - 583
Target Start/End: Complemental strand, 17557717 - 17557663
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaa-ttggaagattaaacaccaata 583  Q
    |||||||||||| ||||||||||||||| |||| |||||||||||||||||||||    
T  17557717 tgttggaacattaatgtgatgttggatgaaaaaattggaagattaaacaccaata 17557663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 530 - 581
Target Start/End: Original strand, 28559074 - 28559125
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||||||| |||||||| ||||| || | |||||||||||||||||||||||    
T  28559074 tgttggaaaattgatgtaatgttcgaagaaaaattggaagattaaacaccaa 28559125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 533 - 581
Target Start/End: Original strand, 28564258 - 28564306
Alignment:
Q  533 tggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    ||||||||| || | |||||||| | |||||||||||||||||||||||    
T  28564258 tggaacattcatataatgttggaagaaaaattggaagattaaacaccaa 28564306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 530 - 581
Target Start/End: Complemental strand, 26668417 - 26668366
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26668417 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaacaccaa 26668366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 530 - 581
Target Start/End: Complemental strand, 26940014 - 26939963
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26940014 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaacaccaa 26939963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 530 - 581
Target Start/End: Original strand, 29166930 - 29166981
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29166930 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaacaccaa 29166981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 530 - 578
Target Start/End: Complemental strand, 7452894 - 7452846
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacac 578  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7452894 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaacac 7452846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 530 - 581
Target Start/End: Complemental strand, 36424777 - 36424726
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  36424777 tgttggaacattgatgtgatgttggataaaaaattggaagattaaacaccaa 36424726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 530 - 581
Target Start/End: Original strand, 37247756 - 37247807
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  37247756 tgttggaacattgatgtgatgttggatgaaaaattgaaagattaaacaccaa 37247807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 530 - 581
Target Start/End: Complemental strand, 39519524 - 39519473
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  39519524 tgttggaacattgatgtgatgttggatgaaaaattgaaagattaaacaccaa 39519473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 530 - 581
Target Start/End: Complemental strand, 39524163 - 39524112
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  39524163 tgttggaacattgatgtgatgttggatgaaaaattgaaagattaaacaccaa 39524112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 530 - 575
Target Start/End: Complemental strand, 36430655 - 36430610
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaa 575  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  36430655 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaa 36430610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 530 - 577
Target Start/End: Original strand, 6154389 - 6154436
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaaca 577  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||    
T  6154389 tgttggaacattgatgtgatgttggatgaaaaattggaaaattaaaca 6154436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 530 - 577
Target Start/End: Original strand, 37646012 - 37646059
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaaca 577  Q
    ||||||||||||||||||||| | |||| |||||||||||||||||||    
T  37646012 tgttggaacattgatgtgatgcttgatgaaaaattggaagattaaaca 37646059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 530 - 581
Target Start/End: Original strand, 20180112 - 20180163
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    ||||||||||||| ||||||| |||  | |||||||||||||||||||||||    
T  20180112 tgttggaacattggtgtgatgctggtagaaaaattggaagattaaacaccaa 20180163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 530 - 577
Target Start/End: Original strand, 37536894 - 37536941
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaaca 577  Q
    ||||||||||||||||||||| | |||| |||||| ||||||||||||    
T  37536894 tgttggaacattgatgtgatgcttgatgaaaaattagaagattaaaca 37536941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 544 - 581
Target Start/End: Original strand, 23757135 - 23757172
Alignment:
Q  544 tgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||||||||||| | |||||||||||||||||||||||    
T  23757135 tgtgatgttggaagaaaaattggaagattaaacaccaa 23757172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 544 - 581
Target Start/End: Original strand, 23822591 - 23822628
Alignment:
Q  544 tgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||||||||||| | |||||||||||||||||||||||    
T  23822591 tgtgatgttggaagaaaaattggaagattaaacaccaa 23822628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 530 - 581
Target Start/End: Original strand, 9184374 - 9184425
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9184374 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaacaccaa 9184425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 530 - 581
Target Start/End: Complemental strand, 18345555 - 18345504
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18345555 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaacaccaa 18345504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 529 - 580
Target Start/End: Original strand, 19891463 - 19891514
Alignment:
Q  529 gtgttggaacattgatgtgatgttggatggaaaattggaagattaaacacca 580  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  19891463 gtgttggaacattgatgtgatgttggatgaaaaattggaagattaaacacca 19891514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 530 - 581
Target Start/End: Original strand, 1933966 - 1934017
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  1933966 tgttggaacattgatgtgatgttggatgaaaaattgaaagattaaacaccaa 1934017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 530 - 577
Target Start/End: Original strand, 17967921 - 17967968
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaaca 577  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||    
T  17967921 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaaca 17967968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 530 - 577
Target Start/End: Original strand, 17974308 - 17974355
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaaca 577  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||    
T  17974308 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaaca 17974355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 530 - 581
Target Start/End: Complemental strand, 30652053 - 30652002
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  30652053 tgttggaacattgatgtgatgttggatgaaaaattgaaagattaaacaccaa 30652002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 529 - 581
Target Start/End: Original strand, 40846477 - 40846529
Alignment:
Q  529 gtgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||||||||||||| |||||||||||| | |||||||||||||||||||||||    
T  40846477 gtgttggaacattggtgtgatgttggaagaaaaattggaagattaaacaccaa 40846529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 530 - 581
Target Start/End: Original strand, 9179683 - 9179734
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||||||| |||||||||||| |||||| |||||||||||||||||||||||    
T  9179683 tgttggaatattgatgtgatggtggatgaaaaattggaagattaaacaccaa 9179734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 530 - 582
Target Start/End: Original strand, 24536973 - 24537025
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaat 582  Q
    ||||||||||||| ||| |||||||| | ||||||||||||||||||||||||    
T  24536973 tgttggaacattggtgttatgttggaagaaaaattggaagattaaacaccaat 24537025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 532 - 581
Target Start/End: Original strand, 20101609 - 20101658
Alignment:
Q  532 ttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||||| |||| |||||||||||| | |||||||||||||||||||||||    
T  20101609 ttggaaaattggtgtgatgttggaagaaaaattggaagattaaacaccaa 20101658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 530 - 581
Target Start/End: Complemental strand, 12798069 - 12798018
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||||||| |||  |||||||||||| | |||||||||||||||||||||||    
T  12798069 tgttggaatattagtgtgatgttggaagaaaaattggaagattaaacaccaa 12798018  T

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Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 530 - 581
Target Start/End: Complemental strand, 10136464 - 10136413
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10136464 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaacaccaa 10136413  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 530 - 581
Target Start/End: Original strand, 26926686 - 26926737
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26926686 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaacaccaa 26926737  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 530 - 581
Target Start/End: Complemental strand, 25844895 - 25844844
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  25844895 tgttggaacattgatgtgatgttggatgaaaaattgaaagattaaacaccaa 25844844  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 530 - 575
Target Start/End: Complemental strand, 8138728 - 8138683
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaa 575  Q
    |||||||||||||||||||| ||||| | |||||||||||||||||    
T  8138728 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaa 8138683  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 530 - 578
Target Start/End: Original strand, 39199733 - 39199781
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacac 578  Q
    ||||||||||||| |||||||| ||| | ||||||||||||||||||||    
T  39199733 tgttggaacattggtgtgatgtgggaagaaaaattggaagattaaacac 39199781  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 80 - 134
Target Start/End: Original strand, 38572334 - 38572388
Alignment:
Q  80 cataacaatacatttcatttaattatggtaaaaataaaaattattaaattgtttt 134  Q
    ||||| ||||||||| ||||||||||  |||||||||| | ||||||||||||||    
T  38572334 cataataatacattttatttaattattttaaaaataaacactattaaattgtttt 38572388  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 533 - 581
Target Start/End: Complemental strand, 11807336 - 11807288
Alignment:
Q  533 tggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||||||||| ||||| || ||| ||||||||||||||||||| |||||    
T  11807336 tggaacattggtgtgaagtgggaaggaaaattggaagattaaataccaa 11807288  T

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Target: scaffold0054 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 533 - 581
Target Start/End: Complemental strand, 30313 - 30265
Alignment:
Q  533 tggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30313 tggaacattgatgtgatgttggatgaaaaattggaagattaaacaccaa 30265  T

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Target: scaffold0002 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 530 - 581
Target Start/End: Complemental strand, 5203 - 5152
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  5203 tgttggaacattgatgtgatgttggatgaaaaattgaaagattaaacaccaa 5152  T

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Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 530 - 581
Target Start/End: Complemental strand, 4931362 - 4931311
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  4931362 tgttggaacattgatgtgatgttggatgaaaaattgaaagattaaacaccaa 4931311  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 534 - 581
Target Start/End: Complemental strand, 2595905 - 2595858
Alignment:
Q  534 ggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    ||||||||||||| |||||||| | |||||||||||||||||||||||    
T  2595905 ggaacattgatgtaatgttggaagaaaaattggaagattaaacaccaa 2595858  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 530 - 581
Target Start/End: Complemental strand, 21672343 - 21672292
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    ||||||||||||| |||||||||||| | |||||||||||| ||||||||||    
T  21672343 tgttggaacattggtgtgatgttggaagaaaaattggaagaataaacaccaa 21672292  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 530 - 575
Target Start/End: Complemental strand, 26342344 - 26342299
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaa 575  Q
    |||||||||||| ||||||||||||||| |||||| ||||||||||    
T  26342344 tgttggaacattaatgtgatgttggatgaaaaattcgaagattaaa 26342299  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 538 - 575
Target Start/End: Original strand, 44508261 - 44508298
Alignment:
Q  538 cattgatgtgatgttggatggaaaattggaagattaaa 575  Q
    |||||||||||||||||||| |||||||||||||||||    
T  44508261 cattgatgtgatgttggatgaaaaattggaagattaaa 44508298  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 530 - 581
Target Start/End: Complemental strand, 3046712 - 3046661
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    ||||| ||||||| |||||||||||| | ||||||| |||||||||||||||    
T  3046712 tgttgaaacattggtgtgatgttggaagaaaaattgaaagattaaacaccaa 3046661  T

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Target: scaffold0352 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 530 - 581
Target Start/End: Complemental strand, 8248 - 8197
Alignment:
Q  530 tgttggaacattgatgtgatgttggatggaaaattggaagattaaacaccaa 581  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||||||    
T  8248 tgttggaacattgatgcgatgttggatgataaattggaagattaaacaccaa 8197  T

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Target: scaffold0240 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 525 - 580
Target Start/End: Complemental strand, 5113 - 5058
Alignment:
Q  525 ataagtgttggaacattgatgtgatgttggatggaaaattggaagattaaacacca 580  Q
    |||||||||||| ||||| |||||||||||| | ||||||| ||||||||||||||    
T  5113 ataagtgttggatcattggtgtgatgttggaagaaaaattgaaagattaaacacca 5058  T

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