View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11022_low_34 (Length: 206)
Name: NF11022_low_34
Description: NF11022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11022_low_34 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 29611140 - 29611317
Alignment:
| Q |
15 |
gcacagaaaaaggtgtaaatgaggggaatacagtactatcatatgaagacttagagaagatccacatggccccttatgtggattgcatagcacaaggtgt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29611140 |
gcacagaaaaaggtgtaaatgaggggaatacaatattatcatatgaagacttagagaagatccacatggccccttatgtggattgcatagcacaaggtgt |
29611239 |
T |
|
| Q |
115 |
ttcaaccattatggtctcatattccagctggaatggagtcaaactccatggtcatcattttctgattaatgatatttt |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29611240 |
ttcaaccattatggtctcatattccagctggaatggagtcaaactccatggtcatcattttctgattaatgatatttt |
29611317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 29582890 - 29582713
Alignment:
| Q |
15 |
gcacagaaaaaggtgtaaatgaggggaatacagtactatcatatgaagacttagagaagatccacatggccccttatgtggattgcatagcacaaggtgt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
29582890 |
gcacagaaaaaggtgtaaatgaggggaatacaatattatcatatgaagacttagagaagatccacatggcttcttatgtggattgcatagcacaaggtgt |
29582791 |
T |
|
| Q |
115 |
ttcaaccattatggtctcatattccagctggaatggagtcaaactccatggtcatcattttctgattaatgatatttt |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29582790 |
ttcaaccattatggtctcatattccagctggaatggagtcaaactccatggtcatcattttctgattaatgatatttt |
29582713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University