View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11022_low_4 (Length: 635)
Name: NF11022_low_4
Description: NF11022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11022_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 111; Significance: 1e-55; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 267 - 511
Target Start/End: Original strand, 37325177 - 37325415
Alignment:
| Q |
267 |
gatatcctcttttctccatttt-tctctaaatcatggggatgtgagttatcaatttttctgtatactataaaacaaatgtcaaaagtttaggtatcagat |
365 |
Q |
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| T |
37325177 |
gatatcctcttttttcaattttctctccaaattacggggatatgagttataaatttttctgcatacaataaaacaaatgtcgaaagtttaggcatctgaa |
37325276 |
T |
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| Q |
366 |
tttacttatggagattgcagttcctgctgatcaaaacctattgaattagagacttgggtagattaatatatcttaaataagcaagctcggcatttccgtt |
465 |
Q |
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| T |
37325277 |
c---cttattgagattgcagttcctgctggtcaaaacctactgaattagagacttgagtagattaatatatcttaaatgagcaagttcaacatttccgtt |
37325373 |
T |
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| Q |
466 |
tataagaaaatataaacaaatattaagaggcagatgaaaatttgaa |
511 |
Q |
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| T |
37325374 |
tataagaaaatat----aaatattaagatgcagatgaaattttgaa |
37325415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 508 - 604
Target Start/End: Original strand, 37326134 - 37326230
Alignment:
| Q |
508 |
tgaatatcatctaaaatccagattcattatagatttactttgatgaatcatgattaattgtaatgaatcactacctaaactaagtgttggtggccac |
604 |
Q |
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| T |
37326134 |
tgaatatcatctaaaatcccaattcattattgatttactacgatgaatcatgattaattgtaatgaatcactacctcaactaagtgtttgttgccac |
37326230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 37325074 - 37325120
Alignment:
| Q |
188 |
accaactcatgccaactatgatggcatcttaaacatgaaatagcttg |
234 |
Q |
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| T |
37325074 |
accaactcatgccaactatgacggcatcttaaacatgaaatagcttg |
37325120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 37324563 - 37324622
Alignment:
| Q |
35 |
agaaagagaaaatggtaagttgcgtctctaacacccttcttgtctagtatggttgttctt |
94 |
Q |
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| T |
37324563 |
agaaagagaaaatggtaagttgcctctctcatacccttcttgtctagtatagtttttctt |
37324622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 539 - 594
Target Start/End: Original strand, 14373004 - 14373058
Alignment:
| Q |
539 |
gatttactttgatgaatcatgattaattgtaatgaatcactacctaaactaagtgt |
594 |
Q |
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| T |
14373004 |
gattgactgtgatgaatcatgattcatt-taatgaatcactacctaaacttagtgt |
14373058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 549 - 596
Target Start/End: Complemental strand, 10931732 - 10931685
Alignment:
| Q |
549 |
gatgaatcatgattaattgtaatgaatcactacctaaactaagtgttg |
596 |
Q |
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| T |
10931732 |
gatgaatctcgattaattgtaatgaatcactacctaaacttagtgttg |
10931685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 548 - 594
Target Start/End: Complemental strand, 30284588 - 30284542
Alignment:
| Q |
548 |
tgatgaatcatgattaattgtaatgaatcactacctaaactaagtgt |
594 |
Q |
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| T |
30284588 |
tgatgaatcatgattcattgtaatgaatcattatctaaacttagtgt |
30284542 |
T |
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