View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11022_low_5 (Length: 629)
Name: NF11022_low_5
Description: NF11022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11022_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 569; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 17 - 609
Target Start/End: Original strand, 42143571 - 42144163
Alignment:
| Q |
17 |
accaacatgagcaagcaagaaaaatatgcaagagttgagaatactatcaaggatctaggcctagaaaggtgtgtgtctagcatggatcaaaattttacgt |
116 |
Q |
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| T |
42143571 |
accaacatgagcaagcaagaaaaatatgcaagagttgagaatactatcagggatctaggcctagaaaggtgtgtgtctagcatggatcaaaatttgacgt |
42143670 |
T |
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| Q |
117 |
aaaatatgattattgaatgctcaaataaagaaattgaactgtattcctaaataatcttttgtgcaaccatagatgtcgccacacgaaaataggtggagga |
216 |
Q |
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|||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42143671 |
aaaatatgattattgaatactcaaataaagaaattaaactgtattcctaaataatcttttgtgcaaccatagatgtcgccacacgaaaataggtggagga |
42143770 |
T |
|
| Q |
217 |
tatctcaaaggcatatcaggaggagaaaggaagagaaccagcataggctatgaaattcttgttgagccttcactgctactacttgatgagccaacttcag |
316 |
Q |
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| T |
42143771 |
tatctcaaaggcatatcaggaggagaaaggaagagaaccagcataggctatgaaattcttgttgagccttcactgctactacttgatgagccaacttcag |
42143870 |
T |
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| Q |
317 |
gtcttgattccacctcagcaaacaaacttcttctcactcttcaaggactagcgaaggtatcagaaactaaatttaactctcattttgataacatttttta |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42143871 |
gtcttgattccacctcagcaaacaaacttcttctcactcttcaaggactagcgaaggtatcagaaactaaatttaactctcattttgataacatttttga |
42143970 |
T |
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| Q |
417 |
acatatgctgaaaaatacttttgaatttcccttaggctggaagaactataatcacaacaattcatcagccatccagcagaatctttaacatgtttgacaa |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42143971 |
acatatgctgaaaaatacttttgaatttcccttaggctggaagaactataatcacaacaattcaccagccatccagcagaatctttaacatgtttgacaa |
42144070 |
T |
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| Q |
517 |
acttcttctgatatcagaaggctctcctgtttattatgggaaggctagagacacagcagagtacttttcatccttgaggttcgtcccggaaat |
609 |
Q |
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| T |
42144071 |
acttcttctgatatcagaaggctctcctgtttattatgggaaggctagagacacagcagagtacttttcatccttgaggttcgtcccggaaat |
42144163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 511 - 571
Target Start/End: Complemental strand, 34224705 - 34224645
Alignment:
| Q |
511 |
tgacaaacttcttctgatatcagaaggctctcctgtttattatgggaaggctagagacaca |
571 |
Q |
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|||||||||| |||||||||||||||||| || ||||||||||| ||| |||||||||||| |
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| T |
34224705 |
tgacaaactttttctgatatcagaaggctatcgtgtttattatgtgaaagctagagacaca |
34224645 |
T |
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