View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11022_low_6 (Length: 627)
Name: NF11022_low_6
Description: NF11022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11022_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 20 - 617
Target Start/End: Complemental strand, 46351295 - 46350707
Alignment:
| Q |
20 |
taagataagtttcaaatatttatttcatatcaaaataaaaatgaaatgtcgatttgaaagctacataataattttcattctatattgttgtggcatggca |
119 |
Q |
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| T |
46351295 |
taagataagtttcaaatatttatttcatatcaaaataaaaatgaaatgtcgatttcaaagctacataataattttcattctatattgt---ggcatggca |
46351199 |
T |
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| Q |
120 |
agttaaagcgattaagacatgagtaaatttggttgaaccgtccaatttagcattcacattctttgtcttttctctgctaacgtatacaactgtagtgcca |
219 |
Q |
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| T |
46351198 |
agttaaagcgattaagacatgagtaaatttggttgaaccgtccaacttagcattcacattctttgtcttttctctgctaacgtacacaactgtagtgcca |
46351099 |
T |
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| Q |
220 |
ttgctttcaaagtggaagcttgtaaccaaatgcatgcaaaatgggaacacgaaaaactttggtcgtagataatgcattgactccaattgaccagaattga |
319 |
Q |
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| T |
46351098 |
ttgctttcaaagtggaagcttgtaaccaaatgcatgcaaaatgggaacacgaaaaactttggtcgtagataatgcattgactccaattgaccagaattga |
46350999 |
T |
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| Q |
320 |
agagggtcatggatcgtcaaatctgtaactttccaccttcaatttacgtgtatcttttttatcatcttatcatatct------catttcctttgtgattg |
413 |
Q |
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| T |
46350998 |
agagggtcatggatcgtcaaatctgtaactttccaccttcaatttacgtgtatct-ttttatcatcttatcatatctcatttccatttccattgtgattg |
46350900 |
T |
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| Q |
414 |
tcttctttttgcaagttgcaagctgcaagcatatatagctttttgcttttattaaagcacgtacgtttaaagattgatttttgtattacaaaagagcatt |
513 |
Q |
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| T |
46350899 |
tcttctttttgcaagttgcaagc-----------atagctttttgcttttattaaagcacgtacgtttaaagattgatttttgtattacaaaagagcatt |
46350811 |
T |
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| Q |
514 |
tcccaaatatagaaaattgaattgcaaagcttttttctcacatgaggggatcacaaaaagaaaatcactgcataaggtatttctagtttcctgaattctc |
613 |
Q |
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| T |
46350810 |
tcccaaatatagaaaattgaattgcaaagcttttttctcacatgaggggatcacaaagagaaaatcactgcataaggtatttctagtttcctgaattctc |
46350711 |
T |
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