View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11022_low_7 (Length: 616)
Name: NF11022_low_7
Description: NF11022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11022_low_7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 593; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 20 - 616
Target Start/End: Complemental strand, 52374015 - 52373419
Alignment:
| Q |
20 |
ttatcctcataacatcttttccaaacctcatctccatcaaaattttcatttttccatcaagaagcttctctttagcagcccatctttgcaatttcccaga |
119 |
Q |
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| T |
52374015 |
ttatcctcataacatcttttccaaacctcatctccattaaaattttcatttttccatcaagaagcttctctttagcagcccatctttgcaatttcccaga |
52373916 |
T |
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| Q |
120 |
agtagttttcggaacacattcactcttaaccaaaacaacccatccaacttctacaccctctttcttcaaaacactttctttaattccttcgccaacactc |
219 |
Q |
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| T |
52373915 |
agtagttttcggaacacattcactcttaaccaaaacaacccatccaacttctacaccctctttcttcaaaacactttctttaattccttcgccaacactc |
52373816 |
T |
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| Q |
220 |
ctcagaatcccttcatccaaatctttttccatcctttgcatctctgcaacaattacaaccgttgctaaaactttaaaagccgcaacacaacctcctcgta |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52373815 |
ctcagaatcccttcatccaaatctttttccatcctttgcatctctgcaacaattacaaccgttgctaaaactttaaaagccgcaacacaacctcctcgta |
52373716 |
T |
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| Q |
320 |
gtaactttgggaaactgttaaaaaccacagtctctatgtaatgtggttgaatcttttcaccattttgaagctgtatagtatcttgaattctaccagtaac |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52373715 |
gtaactttgggaaactgttaaaaaccacagtctctatgtaatgtggttgaatcttttcaccattttgaagctgtatagtatcttgaattctaccagtaac |
52373616 |
T |
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| Q |
420 |
aaagagatacctgttttctccttttacgattcctttgtcacccgttcgaagaaaacacttacgaactgtgtttctgattcttgcatgaaaaacttctctt |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52373615 |
aaagagatacctgttttctccttttacgattcctttgtcacccgttcgaagaaaacacttacgaactgtgtttctgattcttgcatgaaaaacttctctt |
52373516 |
T |
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| Q |
520 |
gttaaagaagggtgaccaaggtaaccagaggcattacttggagatgaaacccaaatttctccttcaacaccatcttcaacagcttcaagtgtttctt |
616 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52373515 |
gttaaagaagggtgaccaaggtaaccagaggcattacttggagatgaaacccaaatttctccttcaacaccatcttcaacagcttcaagtgtttctt |
52373419 |
T |
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