View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11023_high_1_N (Length: 626)
Name: NF11023_high_1_N
Description: NF11023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11023_high_1_N |
 | |
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Alignment Details
Target: chr2 (Bit Score: 447; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 30 - 537
Target Start/End: Original strand, 11119116 - 11119628
Alignment:
| Q |
30 |
ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
129 |
Q |
| |
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||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11119116 |
ccaacaactcccgataaattcgacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
11119215 |
T |
|
| Q |
130 |
cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11119216 |
cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct |
11119315 |
T |
|
| Q |
230 |
tactggaaagaaaggagaaattagaaagcagtgcaattttgttaacaagaaatcttctgaattggatcttgctagtgtggcctcagaatcaatggagggg |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
11119316 |
tactggaaagaaaggagaaattagaaagcagtgcaattttgttaacaagaaatcttctgaattggatcttgctagtgtgacctcagaatcaatggagggg |
11119415 |
T |
|
| Q |
330 |
gatatggttagttcaatctaaatgaatgtgggttactttagttgaaatgcatgtggtgattggaattcactaataaagaaaagtgctagctaggcacatc |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11119416 |
gatatggttagttcaatctaaatgaatgtgggttactttagttgaaatgcatgtggtgattggaattcactaataaagaaaagtgctagctaggcacatc |
11119515 |
T |
|
| Q |
430 |
tgtgccttgatgtgtatgttatgtgctttatgtgtgcaagataaccnnnnnnnnnnctaagtaattttc-----attatagtatatcctctctttccgtc |
524 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||| |
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| T |
11119516 |
tgtgccttgatgtgtatgttatgtgctttatgtgtgcaagataatcttttttttttctaagtaattttcattatattatagtatatcctctctttccgtc |
11119615 |
T |
|
| Q |
525 |
acaagttatgtct |
537 |
Q |
| |
|
||||||||||||| |
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|
| T |
11119616 |
acaagttatgtct |
11119628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 30 - 433
Target Start/End: Original strand, 11111345 - 11111747
Alignment:
| Q |
30 |
ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
129 |
Q |
| |
|
||||| |||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
11111345 |
ccaacgactcctgatacattggacaagaacttctacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattattctcaacaccgggtg |
11111444 |
T |
|
| Q |
130 |
cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct |
229 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
11111445 |
cagataccattagcattgtcaacagctttgcaaatagccaaaatgttttctttcagaactttataaattcaatgattaaaatgggtaatattgatgtgct |
11111544 |
T |
|
| Q |
230 |
tactggaaagaaaggagaaattagaaagcagtgcaattttgttaacaagaaatcttctgaattggatcttgctagtgtggcct---cagaatcaatggag |
326 |
Q |
| |
|
||| ||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||| | |||||||| ||||||||||||| |
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|
| T |
11111545 |
taccggaaagaaaggagaaattagaaaacaatgcaattttattaacaagaaatcttctgaattggatcttggcattgtggcctctgcagaatcaatggaa |
11111644 |
T |
|
| Q |
327 |
ggggatatggttagttcaatctaaatgaatgtgggttactttagttgaaatgcatgtggtgattggaattcactaataaagaaaagtgctagctaggcac |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||| |||| |||| |
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|
| T |
11111645 |
ggggatatggttagttcaatctaaatgaatgtgggttactttagatgaa----atgtggtgattggaattcactaataaagagaagtgctggctaagcac |
11111740 |
T |
|
| Q |
427 |
atctgtg |
433 |
Q |
| |
|
|| |||| |
|
|
| T |
11111741 |
atttgtg |
11111747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 30 - 355
Target Start/End: Complemental strand, 10793449 - 10793121
Alignment:
| Q |
30 |
ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
129 |
Q |
| |
|
||||| |||||||||| ||| |||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
10793449 |
ccaactactcctgatacattggacaagaacttctacaacaatcttcaggttaaaaagggtttgcttcaaagtgaccaagaattgttttcaacaccaaatg |
10793350 |
T |
|
| Q |
130 |
cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct |
229 |
Q |
| |
|
||||||||| ||||||||| || ||||||| || ||||||| || |||||| ||| ||||| || ||||||||||||||||||||||||| ||||| |
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|
| T |
10793349 |
cagataccactagcattgttaataactttgccaataaccaaagtgctttctttgagagctttaagaaagcaatgattaaaatgggtaatattggtgtgct |
10793250 |
T |
|
| Q |
230 |
tactggaaagaaaggagaaattagaaagcagtgcaattttgttaacaagaaatcttctgaattggatcttgctagtgtgg---cctcagaatcaatggag |
326 |
Q |
| |
|
||| ||||||||||||||||| || || || ||||||||||||||||| ||||||||||| || |||||||| | ||| || |||||||| | || |
|
|
| T |
10793249 |
taccggaaagaaaggagaaataaggaaacaatgcaattttgttaacaaaaaatcttctgagttagatcttgccgctctggtctccacagaatcatttgat |
10793150 |
T |
|
| Q |
327 |
ggggatatggttagttcaatctaaatgaa |
355 |
Q |
| |
|
|||||||||||||||||||| |||||||| |
|
|
| T |
10793149 |
ggggatatggttagttcaatttaaatgaa |
10793121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 30 - 275
Target Start/End: Original strand, 11156597 - 11156842
Alignment:
| Q |
30 |
ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
129 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| ||| ||||||||||| |||||||| ||||| |||||||| ||||| |||||||||||| | |||| |
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|
| T |
11156597 |
ccaacgactcctgataaatttgacaagaactattactccaatcttcaagtgaaaaagggcttgctccaaagtgatcaagagttgttctcaacatccggtg |
11156696 |
T |
|
| Q |
130 |
cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct |
229 |
Q |
| |
|
||||||||||||||||||||||||| || | | | | ||||| | |||||| ||| ||||| | |||||||||||||||| |||||||| ||||| |
|
|
| T |
11156697 |
cagataccattagcattgtcaacaaattcagcaccgatcaaaacgctttctttgagagctttaaggctgcaatgattaaaatgggcaatattggtgtgct |
11156796 |
T |
|
| Q |
230 |
tactggaaagaaaggagaaattagaaagcagtgcaattttgttaac |
275 |
Q |
| |
|
|| || | ||||||||| |||||||| || ||||| ||||||||| |
|
|
| T |
11156797 |
aacagggacgaaaggagagattagaaaacaatgcaactttgttaac |
11156842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 30 - 274
Target Start/End: Original strand, 11137655 - 11137899
Alignment:
| Q |
30 |
ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
129 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||| | ||||| ||| | |||| |
|
|
| T |
11137655 |
ccaacgactcctgataaatttgacaagaactactactccaatcttcagggtaaaaagggtttgcttcagagtgaccaagagcttttctcgacatctggtg |
11137754 |
T |
|
| Q |
130 |
cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct |
229 |
Q |
| |
|
| ||||||||||||||||||||||| || | || |||||| |||||| | | |||| | | ||||||||||||||||||||||| ||||| |
|
|
| T |
11137755 |
ctgataccattagcattgtcaacaagttcagtgctgacaaaaatgctttctttgatagctttgaagccgccatgattaaaatgggtaatattggtgtgct |
11137854 |
T |
|
| Q |
230 |
tactggaaagaaaggagaaattagaaagcagtgcaattttgttaa |
274 |
Q |
| |
|
|| || || |||||||| |||||||| || |||||||||||||| |
|
|
| T |
11137855 |
gaccgggaaaaaaggagagattagaaaacattgcaattttgttaa |
11137899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 30 - 159
Target Start/End: Original strand, 11145960 - 11146089
Alignment:
| Q |
30 |
ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
129 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| ||| |||||||||| ||||| ||||||||||||||||| ||||| |||||||||||| | |||| |
|
|
| T |
11145960 |
ccaactactcctgataaatttgacaagaactattactctaatcttcaagtgaaaaaaggtttgcttcaaagtgatcaagagttgttctcaacatctggtg |
11146059 |
T |
|
| Q |
130 |
cagataccattagcattgtcaacaactttg |
159 |
Q |
| |
|
| |||||||||||||||||||||||||||| |
|
|
| T |
11146060 |
ctgataccattagcattgtcaacaactttg |
11146089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 30 - 274
Target Start/End: Original strand, 11149929 - 11150173
Alignment:
| Q |
30 |
ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
129 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| ||| |||||||||| |||||||||||||| |||||||| ||||| |||||||||||| | ||| |
|
|
| T |
11149929 |
ccaacgactcctgataaatttgacaagaactattactctaatcttcaagtgaaaaagggtttgctccaaagtgatcaagagttgttctcaacatctggtt |
11150028 |
T |
|
| Q |
130 |
cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct |
229 |
Q |
| |
|
||||||||||||||||||||||||| |||| || | | ||||| | ||| || ||| ||||| | | ||||| |||||||| |||||||| ||| | |
|
|
| T |
11150029 |
cagataccattagcattgtcaacaaatttgcaaccgatcaaaaagctttttttgagagctttaaggctgctatgatcaaaatgggaaatattggtgtgtt |
11150128 |
T |
|
| Q |
230 |
tactggaaagaaaggagaaattagaaagcagtgcaattttgttaa |
274 |
Q |
| |
|
||||| || ||||||| |||||||| || ||||| |||||||| |
|
|
| T |
11150129 |
aactgggaaacaaggagagattagaaaacaatgcaactttgttaa |
11150173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 82 - 140
Target Start/End: Complemental strand, 11183671 - 11183613
Alignment:
| Q |
82 |
aaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtgcagataccatt |
140 |
Q |
| |
|
||||||| ||| |||| ||||||||||||||||| || ||||| ||||| ||||||||| |
|
|
| T |
11183671 |
aaaaggggttgtttcagagtgaccaagaattgttttccacacctggtgctgataccatt |
11183613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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