View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11023_low_1 (Length: 1036)
Name: NF11023_low_1
Description: NF11023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11023_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 885; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 885; E-Value: 0
Query Start/End: Original strand, 35 - 1018
Target Start/End: Original strand, 11173314 - 11174287
Alignment:
| Q |
35 |
tagaaattttcgtatactatcttttattaaatagaaatagcttaaacataagcatgttacctgaatttgatacgtctaagctcgttgttcccatcaggat |
134 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11173314 |
tagaaattttcgtatactatcttttattatatagaaatagcttaaacataagcatgttacctgaatttgatacgtctaagctcgttgttcccatcaggat |
11173413 |
T |
|
| Q |
135 |
actgcctgactgtgacaaatattccaggctcaacttgctcaatccattctgagtcagggtcactagagttgctgaaggaaatttcattcattgaagaaga |
234 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
11173414 |
actgcctgactgtgacaaatattccaggctcaacttgctcaatccattctgagtcagggtcactagaattgctgaaggaaatttcattcatagaagaaga |
11173513 |
T |
|
| Q |
235 |
ccttaatgctgcatgcatgttttggttgctactgcttccctcacccatagtgaatcctgaaggattaaagtactgattccccaccattggatcattgttt |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11173514 |
ccttaatgctgcatgcatgttttggttgctactgcttccctcacccatagtgaatcctgaaggattaaagtactgattccccaccattggatcattgttt |
11173613 |
T |
|
| Q |
335 |
tcccaagcagccacattgcttccacttccagtttcatgcattgagtaagaagcttctctttgctgttcaaaggaaacaatctaataattagatattaaga |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
11173614 |
tcccaagcagccacattgcttccacttccagtttcatgcattgagtaagaagcttctctttgcttttcaaaggaaacaatgtaataattagatattaaga |
11173713 |
T |
|
| Q |
435 |
gtcttgaaatcatatatgaatgttataaattaaagtttacctcatcctcagatggtagagcagtgctaagagcttggctattgaaactccggacattata |
534 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11173714 |
gtcttgaaatcatatatgaatgttaaaaattaaagtttacctcatcctcagatggtagagcagtgctaagagcttggctattgaaactccggacattata |
11173813 |
T |
|
| Q |
535 |
aagctccctgagtctgtcaaaattctcaccccaccagactctagcttgccacttatcaaagatttctcgacttcacatttaaatattaagcaataagtat |
634 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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|
| T |
11173814 |
aagctccctgagtctgtcaaaattctcaccccaccatactctagcttgccacttatcaaagatttcgcgacttcacatttaaatgttaagcaataagtat |
11173913 |
T |
|
| Q |
635 |
tgttacaactaaattatgagacgtaaactaaacctacgtagcaccgacacttcaaattgaagacgtgtttggtatctgataccaatacgacactgacaca |
734 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11173914 |
tgttacaactaaattatgagacgtaaactaaacctacgtagcactgacacttcaaattgaagacgtgtttggtatctgataccaatacgacactgacaca |
11174013 |
T |
|
| Q |
735 |
tatggttacattcagttacatctatttatcaaatcattacgagtgtcaacgtgtcagtgttgtgttcggtgtttgtgtatgtgtcaatatattaaataga |
834 |
Q |
| |
|
||| ||||||| | |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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|
| T |
11174014 |
tat----------agttacagcaatttatcaaatcattacgagtgtcaacgtgtcagtgttgtgtccagtgtttgtgtatgtgtcaatatattaaataga |
11174103 |
T |
|
| Q |
835 |
actaaacaagtaaaaataatcaaagcttgtaatagtttttaaacatacttgaagcgaattcgcttgagatcatttccaccatcaggaagagacaaaaagg |
934 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11174104 |
actaaacaagtaaaaataatcaaagcttgtaatagtttttaaacatacttgaagcgaattcgcttgagatcatttccaccatcaggaagagacaaaaagg |
11174203 |
T |
|
| Q |
935 |
taacatcaactcccggctccacctcagccacccactctttgttttcctccaccacagcctcaggttccgctacaatcggctctt |
1018 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11174204 |
taacatcaactcccggctccacctcagccacccactctctgttttcctccaccacagcctcaggttccgctacaaccggctctt |
11174287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 879 - 950
Target Start/End: Complemental strand, 30221488 - 30221417
Alignment:
| Q |
879 |
atacttgaagcgaattcgcttgagatcatttccaccatcaggaagagacaaaaaggtaacatcaactcccgg |
950 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||| ||||||||||| |||||||| || ||| ||||| |
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|
| T |
30221488 |
atacctgaagcgaattctcttgagatcatttccaccattaggaagagacacaaaggtaatatgaacccccgg |
30221417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 901 - 976
Target Start/End: Complemental strand, 18968504 - 18968429
Alignment:
| Q |
901 |
agatcatttccaccatcaggaagagacaaaaaggtaacatcaactcccggctccacctcagccacccactctttgt |
976 |
Q |
| |
|
|||||||||||||||| ||||||||| | |||| |||||||||| || ||||||||| |||| |||||| |||| |
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| T |
18968504 |
agatcatttccaccattaggaagagagacaaagataacatcaacccctcgctccacctgcgccaaccactccttgt |
18968429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 876 - 971
Target Start/End: Complemental strand, 19006024 - 19005929
Alignment:
| Q |
876 |
aacatacttgaagcgaattcgcttgagatcatttccaccatcaggaagagacaaaaaggtaacatcaactcccggctccacctcagccacccactc |
971 |
Q |
| |
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||||||||||||| |||||| | ||||||||||||||| | ||||| ||| |||| |||||||| | || |||||||||| ||||||||||| |
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| T |
19006024 |
aacatacttgaagtgaattcttcttagatcatttccaccaataagaagatacacaaagataacatcagcccctggctccacctatgccacccactc |
19005929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 666 - 741
Target Start/End: Original strand, 6213790 - 6213865
Alignment:
| Q |
666 |
acctacgtagcaccgacacttcaaattgaagacgtgtttggtatctgataccaatacgacactgacacatatggtt |
741 |
Q |
| |
|
||||| ||||| ||||||||||| ||||||| | |||||| | ||||| ||||| ||||||||||||||||||||| |
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| T |
6213790 |
acctatgtagctccgacacttcacattgaaggcttgtttgttgtctgacaccaacacgacactgacacatatggtt |
6213865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 776 - 820
Target Start/End: Complemental strand, 5453715 - 5453671
Alignment:
| Q |
776 |
agtgtcaacgtgtcagtgttgtgttcggtgtttgtgtatgtgtca |
820 |
Q |
| |
|
|||||| |||||| ||||||||||| ||||||||||||||||||| |
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|
| T |
5453715 |
agtgtctacgtgttagtgttgtgtttggtgtttgtgtatgtgtca |
5453671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 715 - 799
Target Start/End: Complemental strand, 43328533 - 43328449
Alignment:
| Q |
715 |
accaatacgacactgacacatatggttacattcagttacatctatttatcaaatcattacgagtgtcaacgtgtcagtgttgtgt |
799 |
Q |
| |
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||||| |||||| |||||||| |||||||||| | ||| || ||| |||||| |||| |||||||||||||||||||||||| |
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| T |
43328533 |
accaacacgacaatgacacatgtggttacattaaattatttcattttctcaaattattataagtgtcaacgtgtcagtgttgtgt |
43328449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 672 - 703
Target Start/End: Original strand, 4628293 - 4628324
Alignment:
| Q |
672 |
gtagcaccgacacttcaaattgaagacgtgtt |
703 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
4628293 |
gtagcaccgacacttcaaattgaagacgtgtt |
4628324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 668 - 703
Target Start/End: Complemental strand, 10794645 - 10794610
Alignment:
| Q |
668 |
ctacgtagcaccgacacttcaaattgaagacgtgtt |
703 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |
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|
| T |
10794645 |
ctacgtagcaccgacacttcatattgaagacgtgtt |
10794610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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