View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11023_low_2 (Length: 273)
Name: NF11023_low_2
Description: NF11023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11023_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 56165406 - 56165596
Alignment:
| Q |
16 |
aatagcatattggtttacaccaagtctgttggtgtgatttgccttccaaatcgaaattcagtttcagcttcatgttgttcaacattctccatctcgccac |
115 |
Q |
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| T |
56165406 |
aatagcatattggtttacaccaagtctgttggtgtgttttgccttccaaatcgaaattcagtttcagcttcatgttgttcaacattctccatctcgccac |
56165505 |
T |
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| Q |
116 |
caatgcttttactaaaagcaagtttcttccatttaaagaaacctttcttcttctcaaccatcttttccatatgtgcttgcatgacattgca |
206 |
Q |
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| T |
56165506 |
caatgcttttactaaaagcaagtttcttccatttaaagaaacctttcttcttctcaaccatcttttccatatgtgcttgcatgacattgca |
56165596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 53 - 206
Target Start/End: Original strand, 44263708 - 44263858
Alignment:
| Q |
53 |
tttgccttccaaatcgaaattcagtttcagcttcatgttgttcaacattctccatctcgccaccaatgcttttactaaaagcaagtttcttccatttaaa |
152 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || |
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| T |
44263708 |
tttgccttccaaatccaaattcagtttcagcttcatcttgttcaacattctccatctctccg---atgcttttactaaaagcaagtttcttccatttgaa |
44263804 |
T |
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| Q |
153 |
gaaacctttcttcttctcaaccatcttttccatatgtgcttgcatgacattgca |
206 |
Q |
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| T |
44263805 |
gaaacttttcttcttctcagccatcttgtccatctgtgcttgcatgacattgca |
44263858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 44262870 - 44262911
Alignment:
| Q |
16 |
aatagcatattggtttacaccaagtctgttggtgtgatttgc |
57 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44262870 |
aatagcatattggtttacaccaagtctgttggtgtgttttgc |
44262911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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