View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11024_low_1 (Length: 570)
Name: NF11024_low_1
Description: NF11024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11024_low_1 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0189 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 19 - 563
Target Start/End: Original strand, 24039 - 24568
Alignment:
| Q |
19 |
ggttcttggtacagctaatgtaaaagatgaactgtttgtgcaaattctgaaaagatttgaagatgacaatacaccctggaaagaattcattcaaggcgta |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24039 |
ggttcttggtacagctaatgtaaaagatgaactgtttgtgcaaattctgaaaagatttgaagatgacaatacaccctggaaagaattcattcaaggcgta |
24138 |
T |
|
| Q |
119 |
cagttaaattcagcaaatgaagtgacttttgaggttgatcgcactcataggcttttcaaagcattggattatacttatcgggtgaattggatgaatgaag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24139 |
cagttaaattcagcaaatgaagtgacttttgaggttgatcgcactcataggcttttcaaagcattggattatacttatcgggtgaattggatgaatgaag |
24238 |
T |
|
| Q |
219 |
ttgactatatgtctcccagctgctttatgtatcttattgagcggctgctgctgtatgtatcacatttgaacggctaccggaaaggtttcatttacgtaac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24239 |
ttgactatatgtctcccagctgctttatgtatcttattgagcggctgctgctgtatgtatcacatttgaacggctaccggaaaggtttcatttacgtaac |
24338 |
T |
|
| Q |
319 |
aaagtcatctttcactgaatggctaatttgccaggatgaaaattctctttcaaagttgagctttgtgcctgttgaacagtcagacatgaaacctgtcctt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
24339 |
aaagtcatctttcactgaatggctaatttgccaggatgaaaattctctttcaaagttgagctttgtgcctgttgtacagtcagacataaaacctgtcctt |
24438 |
T |
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| Q |
419 |
gatttcattgc-aaatatcctgcatgagttatttcatgatcaaaatggtaccaaagcctggatnnnnnnntcaaacttggatgtgaagaattattttaca |
517 |
Q |
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||||||||||| ||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24439 |
gatttcattgcaaaacatcctgcatgagttat----------------taccaaagcctggataaaaaaatcaaacttggatgtgaagaattattttaca |
24522 |
T |
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| Q |
518 |
tcgcttctcattagattggtttcttcagcgtgtttgcttcatctca |
563 |
Q |
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| T |
24523 |
tcgcttctcattagattggtttcttcagcgtgtttgcttcatctca |
24568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 418 - 525
Target Start/End: Complemental strand, 1219248 - 1219141
Alignment:
| Q |
418 |
tgatttcattgcaaatatcctgcatgagttatttcatgatcaaaatggtaccaaagcctggatnnnnnnntcaaacttggatgtgaagaattattttaca |
517 |
Q |
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|||||| || || |||||||| | |||||| || |||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||| || |
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| T |
1219248 |
tgattttatcgccaatatcctccgtgagtttgtttatgatcaaaatggtaccaaaacctggattaaaaaatcaaactaggatgtgaagaattattttcca |
1219149 |
T |
|
| Q |
518 |
tcgcttct |
525 |
Q |
| |
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|||||||| |
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| T |
1219148 |
tcgcttct |
1219141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 1219445 - 1219373
Alignment:
| Q |
200 |
gtgaattggatgaatgaagttgactatatgtctcccagctgctttatgtatcttattgagcggctgctgctgt |
272 |
Q |
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| T |
1219445 |
gtgaattggataaaggaagttgactatatatctcccgattgctttatgtatcttgttgaatggctactgctgt |
1219373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 381
Target Start/End: Complemental strand, 1219340 - 1219276
Alignment:
| Q |
317 |
acaaagtcatctttcactgaatggctaatttgccaggatgaaaattctctttcaaagttgagctt |
381 |
Q |
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||||| |||||||||| || ||||| ||||||||||||| |||||| |||||||| || ||||| |
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| T |
1219340 |
acaaaatcatctttcatcgagtggcttatttgccaggatgcaaattccctttcaaattttagctt |
1219276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 34602013 - 34601947
Alignment:
| Q |
21 |
ttcttggtacagctaatgtaaaagatgaactgtttgtgcaaattctgaaaagatttgaagatgacaa |
87 |
Q |
| |
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|||||||||||||||||||||||||||| | |||||||||| || ||| ||| ||||||||| |||| |
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| T |
34602013 |
ttcttggtacagctaatgtaaaagatgatccgtttgtgcaagttatgacaaggtttgaagataacaa |
34601947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 169 - 258
Target Start/End: Complemental strand, 34601850 - 34601761
Alignment:
| Q |
169 |
gcttttcaaagcattggattatacttatcgggtgaattggatgaatgaagttgactatatgtctcccagctgctttatgtatcttattga |
258 |
Q |
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||||| |||||||||| |||||||| | |||||| |||| || ||||||||||| || |||||||| ||||||||||||||| |||| |
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| T |
34601850 |
gctttacaaagcattgtgttatacttggagtgtgaatcggataaaggaagttgactacatatctcccagttgctttatgtatctttttga |
34601761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 139
Target Start/End: Original strand, 28403686 - 28403801
Alignment:
| Q |
21 |
ttcttggtacagctaatgtaaaagatgaactgtttgtgcaaattctgaaaagatttgaagatgacaatacaccctggaaagaattcattcaaggcgtaca |
120 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||| ||||| || ||| ||||||||||||| |||| || |||||||| ||||||||| || ||| |
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| T |
28403686 |
ttcttggtacagataatgtaaaagatgatctgttcctgcaagttatgacaagatttgaagataacaa---acattggaaagatttcattcaaagcttacg |
28403782 |
T |
|
| Q |
121 |
gttaaattcagcaaatgaa |
139 |
Q |
| |
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||| |||||||| ||||| |
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| T |
28403783 |
gttttattcagcacatgaa |
28403801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 28403880 - 28403952
Alignment:
| Q |
200 |
gtgaattggatgaatgaagttgactatatgtctcccagctgctttatgtatcttattgagcggctgctgctgt |
272 |
Q |
| |
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||||||||||| || || ||||||||||| |||||||| ||||||||||||||| |||| | ||| ||||||| |
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| T |
28403880 |
gtgaattggataaaggatgttgactatatatctcccagttgctttatgtatcttgttgaacagctactgctgt |
28403952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 317 - 351
Target Start/End: Original strand, 28403988 - 28404022
Alignment:
| Q |
317 |
acaaagtcatctttcactgaatggctaatttgcca |
351 |
Q |
| |
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|||||||||||||||||||||||||| |||||||| |
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| T |
28403988 |
acaaagtcatctttcactgaatggcttatttgcca |
28404022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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