View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11024_low_2 (Length: 528)
Name: NF11024_low_2
Description: NF11024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11024_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 272 - 513
Target Start/End: Complemental strand, 34617652 - 34617414
Alignment:
| Q |
272 |
tcacttcctactctttttgtctatcttttgtagtacaatgcaataaactgcatctgtgttctttcttttcttttccttctatggattgatgctttttgga |
371 |
Q |
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| T |
34617652 |
tcacttcctactctttttgtctatcttttgtagtacaatgcaataaactgcatctgtattctttcttttcttttcattctacggattgatgctttttgga |
34617553 |
T |
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| Q |
372 |
gttcatattgattctttagtgttgtgactagtgacaacttcttatgnnnnnnnccttacaatatttgtagcatagcatgtttgtaagaataagaatatta |
471 |
Q |
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| T |
34617552 |
gttcatattgattctttagtgttgtgtctagtgacaa---cttatgtttttttccttacaatatttgtagcatagcatgtttgtaagaataagaatatta |
34617456 |
T |
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| Q |
472 |
tctgagctacaatgatgtgcaactcttttagtactttctctg |
513 |
Q |
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| T |
34617455 |
tctgagctacaatgatgtgcaactcttttagtactttctctg |
34617414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 126 - 265
Target Start/End: Complemental strand, 34617886 - 34617751
Alignment:
| Q |
126 |
tcaattaggggaaaatatgtgatgtaagcatactgtgccatgttgctggtggcttgtctaaaagtaaatttgtgttcatattaatgtttgggggcatcaa |
225 |
Q |
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| T |
34617886 |
tcaattaggggaaaatatgtgatgtaagcataatgtgccatgttgctggtggcttgtctaa--gtaaat--gtgttcatattaatgtttgggggcatcaa |
34617791 |
T |
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| Q |
226 |
agagtatcttcagtggctcggttcggataaagcttctaat |
265 |
Q |
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| T |
34617790 |
agagtatcttcagtggctcggttcggataaagcttctaat |
34617751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 426 - 490
Target Start/End: Original strand, 38857969 - 38858033
Alignment:
| Q |
426 |
cttacaatatttgtagcatagcatgtttgtaagaataagaatattatctgagctacaatgatgtg |
490 |
Q |
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| T |
38857969 |
cttacaatatttgtaacatagtatgttctgaagaataagaattttatctgaacttcaatgatgtg |
38858033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 309
Target Start/End: Original strand, 38857712 - 38857767
Alignment:
| Q |
255 |
aagcttctaatgctcattcacttcctactctt-tttgtctatcttttgtagtacaa |
309 |
Q |
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| T |
38857712 |
aagcttctaattctcattcactttctcatcttatttgtctatcttttgtagtacaa |
38857767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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