View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11024_low_3 (Length: 460)
Name: NF11024_low_3
Description: NF11024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11024_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 215
Target Start/End: Original strand, 48091407 - 48091611
Alignment:
| Q |
11 |
caaaggcacagtggcacaacgtgctttctttgtgtttggtgattctcttgttgataatggtaacaataattacttagcaactactgctcgagctgatgct |
110 |
Q |
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| T |
48091407 |
caaaggcacagtggcacaacgtgctttctttgtgtttggtgattctcttgttgataatggtaacaataattacttagcaactactgctcgagctgatgct |
48091506 |
T |
|
| Q |
111 |
cctccttatggcattgattatccaactcgtagacccaccggacgtttctctaatggctacaacattcctgacttcatcagttaagataatcattcatttc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48091507 |
cctccttatggcattgattatccaactcgtagacccaccggacgtttctctaatggctacaacattcctgacttcatcagttaagataatcattcatttc |
48091606 |
T |
|
| Q |
211 |
tattt |
215 |
Q |
| |
|
||||| |
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|
| T |
48091607 |
tattt |
48091611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 233 - 444
Target Start/End: Original strand, 48091602 - 48091820
Alignment:
| Q |
233 |
atttctatgttgagagtgaagattgaatcttcgacctaattctccctcactcagcaaccatgcaaaatttatatcccccataataatgtgattaacatta |
332 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48091602 |
atttctat-ttgagagtgaagattgaatcttcgacctaattctccctcactcagcaaccatgcaaaatttatatcccccataataatgtgattaacatta |
48091700 |
T |
|
| Q |
333 |
aacttatatag--------nnnnnnnnatgcaatgattttgcaggtcaagcacttggggcagaaccaacgttgccttatttaagtcctgaactcaatgga |
424 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48091701 |
aacttatatagttttttttttttttttatgcaatgattttgcaggtcaagcacttggggcagaaccaacgttgccttatttaagtcctgaactcaatgga |
48091800 |
T |
|
| Q |
425 |
gaggcgctactagttggtgc |
444 |
Q |
| |
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|||||||||||||||||||| |
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|
| T |
48091801 |
gaggcgctactagttggtgc |
48091820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 39 - 191
Target Start/End: Original strand, 48074379 - 48074531
Alignment:
| Q |
39 |
tttgtgtttggtgattctcttgttgataatggtaacaataattacttagcaactactgctcgagctgatgctcctccttatggcattgattatccaactc |
138 |
Q |
| |
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||||| ||||||||||| |||||||| ||||| |||||||| ||||||||||| |||||||| |||||| || ||||||||||||||||||||||||| |
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| T |
48074379 |
tttgtttttggtgattcacttgttgacaatggcaacaataactacttagcaaccactgctcgtgctgattcttacccttatggcattgattatccaactc |
48074478 |
T |
|
| Q |
139 |
gtagacccaccggacgtttctctaatggctacaacattcctgacttcatcagt |
191 |
Q |
| |
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| |||| ||||| ||||| |||||| |||||| |||||| | |||||| |
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|
| T |
48074479 |
accgtgccactggacgcttctccaatggcctcaacatgcctgaccttatcagt |
48074531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 33 - 181
Target Start/End: Original strand, 1807235 - 1807383
Alignment:
| Q |
33 |
gctttctttgtgtttggtgattctcttgttgataatggtaacaataattacttagcaactactgctcgagctgatgctcctccttatggcattgattatc |
132 |
Q |
| |
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||||| ||||| ||||| ||||| |||||||||||||| || || ||||| || || |||||||| |||||| ||||||||||||| |||||||||| |
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| T |
1807235 |
gctttttttgtatttggagattcacttgttgataatggaaataacaattatttgcttacaactgctcgtgctgattctcctccttatggaattgattatc |
1807334 |
T |
|
| Q |
133 |
caactcgtagacccaccggacgtttctctaatggctacaacattcctga |
181 |
Q |
| |
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||||||||| ||| || || ||||| || ||||||| ||| |||||||| |
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| T |
1807335 |
caactcgtaaaccaactggtcgtttttcaaatggcttcaatattcctga |
1807383 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 33 - 195
Target Start/End: Original strand, 48100337 - 48100499
Alignment:
| Q |
33 |
gctttctttgtgtttggtgattctcttgttgataatggtaacaataattacttagcaactactgctcgagctgatgctcctccttatggcattgattatc |
132 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| | ||| ||||| ||||| || | |||||||||| | |||||| ||||||||||||| |||||||||| |
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|
| T |
48100337 |
gctttctttgtatttggtgattcacttgttgacagtggcaacaacaattatttggtaactactgctagggctgattctcctccttatggaattgattatc |
48100436 |
T |
|
| Q |
133 |
caactcgtagacccaccggacgtttctctaatggctacaacattcctgacttcatcagttaag |
195 |
Q |
| |
|
| || |||| || ||||| || ||||| ||||| ||| |||||||| | |||||||||| |
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|
| T |
48100437 |
cgaccggtaggccaaccggtcgattctccaatggtctcaatattcctgatcttatcagttaag |
48100499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 407 - 444
Target Start/End: Original strand, 48074693 - 48074730
Alignment:
| Q |
407 |
agtcctgaactcaatggagaggcgctactagttggtgc |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
48074693 |
agtcctgaactcaatggagaggcgctactagttggtgc |
48074730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 48083711 - 48083776
Alignment:
| Q |
117 |
tatggcattgattatccaactcgtagacccaccggacgtttctctaatggctacaacattcctgac |
182 |
Q |
| |
|
||||||||||||||||||| || || || || || |||||||||||||||||||| || |||||| |
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| T |
48083711 |
tatggcattgattatccaagtcacaggcctacagggcgtttctctaatggctacaatatccctgac |
48083776 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 36 - 132
Target Start/End: Complemental strand, 7388350 - 7388254
Alignment:
| Q |
36 |
ttctttgtgtttggtgattctcttgttgataatggtaacaataattacttagcaactactgctcgagctgatgctcctccttatggcattgattatc |
132 |
Q |
| |
|
||||| |||||||| ||||| |||||||||||||| || || |||||||| || |||||||| || |||||||| || |||||||| |||||||||| |
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|
| T |
7388350 |
ttcttagtgtttggagattcacttgttgataatggaaataacaattacttggctactactgcacgtgctgatgcacccccttatggtattgattatc |
7388254 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 30 - 192
Target Start/End: Complemental strand, 35355392 - 35355230
Alignment:
| Q |
30 |
cgtgctttctttgtgtttggtgattctcttgttgataatggtaacaataattacttagcaactactgctcgagctgatgctcctccttatggcattgatt |
129 |
Q |
| |
|
||||||||||| |||||||| || || |||||||||||||| || || |||| || || || | || ||||| || ||| |||||||||||||||| |
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|
| T |
35355392 |
cgtgctttcttcgtgtttggagactcacttgttgataatggcaataacaattttttggctacctcggcgcgagccaattatccaccttatggcattgatt |
35355293 |
T |
|
| Q |
130 |
atccaactcgtagacccaccggacgtttctctaatggctacaacattcctgacttcatcagtt |
192 |
Q |
| |
|
|||||||||| |||||| ||||||||||| ||||||| ||| ||||||| || ||||||| |
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|
| T |
35355292 |
ttccaactcgtcaacccactggacgtttctccaatggcttaaacgttcctgatttaatcagtt |
35355230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 133
Target Start/End: Complemental strand, 29769856 - 29769753
Alignment:
| Q |
30 |
cgtgctttctttgtgtttggtgattctcttgttgataatggtaacaataattacttagcaactactgctcgagctgatgctcctccttatggcattgatt |
129 |
Q |
| |
|
|||||||||||||| |||||||| || |||||||| | ||| ||||||||||| || ||| || || || || || |||||||||||||||| |||| |
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| T |
29769856 |
cgtgctttctttgtttttggtgactcacttgttgacagtggcaacaataattatttgctaaccacggcacgtgccgactctcctccttatggcatcgatt |
29769757 |
T |
|
| Q |
130 |
atcc |
133 |
Q |
| |
|
|||| |
|
|
| T |
29769756 |
atcc |
29769753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 182
Target Start/End: Complemental strand, 6343196 - 6343053
Alignment:
| Q |
39 |
tttgtgtttggtgattctcttgttgataatggtaacaataattacttagcaactactgctcgagctgatgctcctccttatggcattgattatccaactc |
138 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| || ||||| | | |||| ||||||||||| |||||| | ||||||||| ||||||| || ||||| |
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|
| T |
6343196 |
tttgtttttggtgattctcttgtggataatggaaataataacttcctagccactactgctcgtgctgattcatatccttatggaattgattctcaaactc |
6343097 |
T |
|
| Q |
139 |
gtagacccaccggacgtttctctaatggctacaacattcctgac |
182 |
Q |
| |
|
|||| | | || |||||||| |||||| |||||| |||||| |
|
|
| T |
6343096 |
atagagcttctggtcgtttctccaatggcctcaacatgcctgac |
6343053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 12945955 - 12945917
Alignment:
| Q |
45 |
tttggtgattctcttgttgataatggtaacaataattac |
83 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
12945955 |
tttggagattctcttcttgataatggtaacaataattac |
12945917 |
T |
|
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