View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11024_low_4 (Length: 342)

Name: NF11024_low_4
Description: NF11024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11024_low_4
NF11024_low_4
[»] chr5 (14 HSPs)
chr5 (1-325)||(42783179-42783503)
chr5 (1-321)||(27173225-27173545)
chr5 (1-307)||(41227878-41228188)
chr5 (3-314)||(32642904-32643224)
chr5 (193-316)||(42564971-42565094)
chr5 (193-253)||(42840513-42840573)
chr5 (193-253)||(39724571-39724631)
chr5 (9-73)||(43322992-43323056)
chr5 (194-253)||(40549285-40549344)
chr5 (190-245)||(43322816-43322871)
chr5 (202-251)||(9764510-9764559)
chr5 (190-246)||(41996220-41996276)
chr5 (190-250)||(42262378-42262438)
chr5 (193-253)||(42414002-42414062)
[»] chr1 (1 HSPs)
chr1 (1-314)||(51874512-51874830)
[»] chr2 (3 HSPs)
chr2 (193-263)||(44937797-44937867)
chr2 (185-250)||(7435216-7435281)
chr2 (193-253)||(44918486-44918546)
[»] chr6 (4 HSPs)
chr6 (193-310)||(21378470-21378587)
chr6 (193-264)||(21374379-21374450)
chr6 (175-250)||(34281937-34282012)
chr6 (186-308)||(29300039-29300161)
[»] chr8 (10 HSPs)
chr8 (193-245)||(6117909-6117961)
chr8 (193-253)||(15338149-15338209)
chr8 (193-253)||(15427214-15427274)
chr8 (193-253)||(15518518-15518578)
chr8 (194-245)||(12711784-12711835)
chr8 (198-253)||(15600584-15600639)
chr8 (198-253)||(15631867-15631922)
chr8 (193-251)||(26607075-26607133)
chr8 (202-252)||(27183901-27183951)
chr8 (201-254)||(13472933-13472986)
[»] chr3 (1 HSPs)
chr3 (201-248)||(2703734-2703781)
[»] chr7 (1 HSPs)
chr7 (175-253)||(42446353-42446431)
[»] scaffold0054 (1 HSPs)
scaffold0054 (175-263)||(39802-39890)


Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 42783503 - 42783179
Alignment:
Q  1 aattacttatttattccaccaattggaagaaggtcttccttgtaaactgctatatgacaatattctcctttaagatcaagcacctcaatcatttgggttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42783503 aattacttatttattccaccaattggaagaaggtcttccttgtaaactgctatattacaatattctcctttaagatcaagcacctcaatcatttgggttc 42783404  T
Q  101 ttaagtcaaaccaatttatttctctgtctttctttctgaagattattttaccctttgtcgttccaaaaggttcttcaacgcaatgcaacggcccaacaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  42783403 ttaagtcaaaccaatttatttctctgtctttctttctgaagattattttaccctttgtcattccaaaaggttcttcaacgcaatgcaacggcccaacaat 42783304  T
Q  201 aaagagtttaatccatgattcttttacacttagttcacccaaaattgatatgttacaagtagtcgtttggtcttcataagtgatcaaggcaatgtatcca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42783303 aaagagtttaatccatgattcttttacacttagttcacccaaaattgatatgttacaagtagtcgtttggtcttcataagtgatcaaggcaatgtatcca 42783204  T
Q  301 tttaacaccaccaattgtttctgtg 325  Q
    |||||||||||||||||||||||||    
T  42783203 tttaacaccaccaattgtttctgtg 42783179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 27173225 - 27173545
Alignment:
Q  1 aattacttatttattccaccaattggaagaaggtcttccttgtaaactgctatatgacaatattctcctttaagatcaagcacctcaatcatttgggttc 100  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||    
T  27173225 aattacatatttattccaccaattggaagaaggccttccttgtaaactgctatatcacaatattctcctttaatatcaagctcctcaatcatttgggttc 27173324  T
Q  101 ttaagtcaaaccaatttatttctctgtctttctttctgaagattattttaccctttgtcgttccaaaaggttcttcaacgcaatgcaacggcccaacaat 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||    
T  27173325 ttaagtcaaaccaatttatttctctgtctttctttttgaagattattttaccctttgccattccaaaaggttcttcaacgcaatgcaacggtccaacaat 27173424  T
Q  201 aaagagtttaatccatgattcttttacacttagttcacccaaaattgatatgttacaagtagtcgtttggtcttcataagtgatcaaggcaatgtatcca 300  Q
     ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||| |||||||||||||| ||||||    
T  27173425 gaagagtttaatccatgattcttttacacttagttcactcaaaattgatatgttacaagtagtcatttgttcttcatatgtgatcaaggcaatatatcca 27173524  T
Q  301 tttaacaccaccaattgtttc 321  Q
    |||||||||||||||||||||    
T  27173525 tttaacaccaccaattgtttc 27173545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 41228188 - 41227878
Alignment:
Q  1 aattacttatttattccaccaattggaagaaggtcttccttgtaaactgctatatgacaatattctcctttaagatcaagcacctcaatcatttgggttc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  41228188 aattacttatttattccaccaattggaagaaggtcttccttgtaaactgctatatgacaatattctccttcaagatgaagcacctcaatcatttgggttc 41228089  T
Q  101 ttaagtcaaaccaatttatttctctgtctttctttctgaagattattttaccctttgtcgttccaaaaggttcttcaacgcaatgcaacggcccaacaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41228088 ttaagtcaaaccaatttatttctctgtctttctttctgaagattattttatcctttgtcattccaaaaggttcttcaacgcaatgcaacggcccaacaat 41227989  T
Q  201 aaagagtttaatccatgattcttttacacttagttcacccaaaattg----atatgttacaagtagtcgtttggtcttcataagtgatcaaggcaatgta 296  Q
     ||||||||||||||||||||||||||||||||||||||| ||||||    ||||||||||||||||| |||| |||||||| |||||||||||||||||    
T  41227988 gaagagtttaatccatgattcttttacacttagttcacccgaaattgatatatatgttacaagtagtcatttgttcttcatatgtgatcaaggcaatgta 41227889  T
Q  297 tccatttaaca 307  Q
    | |||||||||    
T  41227888 ttcatttaaca 41227878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 3 - 314
Target Start/End: Complemental strand, 32643224 - 32642904
Alignment:
Q  3 ttacttatttattccaccaattggaagaaggtcttccttgtaaactgctat---------atgacaatattctcctttaagatcaagcacctcaatcatt 93  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||         | ||| || | ||||||||| ||||||  |||||||||||    
T  32643224 ttacttatttattccaccaattggaagaaggttttccttgtaaactactatccgataaccacgactatctcctcctttaacatcaaggtcctcaatcatt 32643125  T
Q  94 tgggttcttaagtcaaaccaatttatttctctgtctttctttctgaagattattttaccctttgtcgttccaaaaggttcttcaacgcaatgcaacggcc 193  Q
    ||||| ||||| |||||||||  || || | |  |||| ||| |||||| |||||| ||||||  |  |||||||||    || || ||   ||  || |    
T  32643124 tgggtacttaaatcaaaccaagctagttttttaactttttttttgaagaatattttgccctttcccactccaaaaggacgctcgacacatgacagaggtc 32643025  T
Q  194 caacaataaagagtttaatccatgattcttttacacttagttcacccaaaattgatatgttacaagtagtcgtttggtcttcataagtgatcaaggcaat 293  Q
    ||||||| |||||||| ||||||||||| || ||| ||| ||||| |||||||||||||||| |||||| | |||| |||| ||| |||||||| |||||    
T  32643024 caacaatgaagagtttgatccatgattccttcacagttaattcactcaaaattgatatgttaaaagtagccatttgttcttgatatgtgatcaacgcaat 32642925  T
Q  294 gtatccatttaacaccaccaa 314  Q
    | |||||||||||||| ||||    
T  32642924 ggatccatttaacaccgccaa 32642904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 193 - 316
Target Start/End: Original strand, 42564971 - 42565094
Alignment:
Q  193 ccaacaataaagagtttaatccatgattcttttacacttagttcacccaaaattgatatgttacaagtagtcgtttggtcttcataagtgatcaaggcaa 292  Q
    |||||||| || ||||| ||||||||||| || |||| |||||||||||||| |||||||||| |||||||  | |  || | ||| |||||||| ||||    
T  42564971 ccaacaatgaaaagtttgatccatgattccttgacacctagttcacccaaaactgatatgttaaaagtagttatcttctcgtgatatgtgatcaaagcaa 42565070  T
Q  293 tgtatccatttaacaccaccaatt 316  Q
    |  ||||||||||||||| |||||    
T  42565071 tcgatccatttaacaccatcaatt 42565094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 42840513 - 42840573
Alignment:
Q  193 ccaacaataaagagtttaatccatgattcttttacacttagttcacccaaaattgatatgt 253  Q
    ||||||||||||| |||| ||||||||||||||||||  ||||||||||||||||| ||||    
T  42840513 ccaacaataaagactttagtccatgattcttttacaccaagttcacccaaaattgaaatgt 42840573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 39724571 - 39724631
Alignment:
Q  193 ccaacaataaagagtttaatccatgattcttttacacttagttcacccaaaattgatatgt 253  Q
    |||||||| ||||||||| ||||||||||||||| ||  ||||| ||||||||||||||||    
T  39724571 ccaacaatgaagagtttagtccatgattcttttataccgagttcccccaaaattgatatgt 39724631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 43323056 - 43322992
Alignment:
Q  9 atttattccaccaattggaagaaggtcttccttgtaaactgctatatgacaatattctcctttaa 73  Q
    ||||||||| ||||||||||| | || ||||||||||| | ||||||||||||  ||||||||||    
T  43323056 atttattcctccaattggaagcatgttttccttgtaaattcctatatgacaattctctcctttaa 43322992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 194 - 253
Target Start/End: Complemental strand, 40549344 - 40549285
Alignment:
Q  194 caacaataaagagtttaatccatgattcttttacacttagttcacccaaaattgatatgt 253  Q
    |||||| ||||||||| ||||||||||| || ||||  | ||||||||||||||||||||    
T  40549344 caacaacaaagagtttgatccatgattccttcacaccgacttcacccaaaattgatatgt 40549285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 190 - 245
Target Start/End: Complemental strand, 43322871 - 43322816
Alignment:
Q  190 ggcccaacaataaagagtttaatccatgattcttttacacttagttcacccaaaat 245  Q
    |||||||||||||||||||| |||||| |||  |||||||  ||||||||||||||    
T  43322871 ggcccaacaataaagagtttgatccataatttctttacaccgagttcacccaaaat 43322816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 9764559 - 9764510
Alignment:
Q  202 aagagtttaatccatgattcttttacacttagttcacccaaaattgatat 251  Q
    |||||| ||||||||||||| || ||||  ||||||||||||||||||||    
T  9764559 aagagtctaatccatgattccttgacaccaagttcacccaaaattgatat 9764510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 246
Target Start/End: Original strand, 41996220 - 41996276
Alignment:
Q  190 ggcccaacaataaagagtttaatccatgattcttttacacttagttcacccaaaatt 246  Q
    ||||||||||| ||||| ||| |||||||||| ||||||   |||||||||||||||    
T  41996220 ggcccaacaatgaagagcttagtccatgattcctttacatcaagttcacccaaaatt 41996276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 42262438 - 42262378
Alignment:
Q  190 ggcccaacaataaagagtttaatccatgattcttttacacttagttcacccaaaattgata 250  Q
    ||||| ||||||||||| || |||||||||||| | ||||  |||| ||||||||||||||    
T  42262438 ggccccacaataaagagatttatccatgattctctcacaccaagtttacccaaaattgata 42262378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 253
Target Start/End: Complemental strand, 42414062 - 42414002
Alignment:
Q  193 ccaacaataaagagtttaatccatgattcttttacacttagttcacccaaaattgatatgt 253  Q
    |||||||||||||||||| ||||||| || |||||||  | ||| ||||||||||| ||||    
T  42414062 ccaacaataaagagtttagtccatgactcctttacaccaaattcgcccaaaattgaaatgt 42414002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 51874512 - 51874830
Alignment:
Q  1 aattacttatttattccaccaattggaagaaggtcttccttgtaaactgctatatgacaata-----ttctcctttaagatcaagcacctcaatcatttg 95  Q
    ||||||||||||||||| ||||||||||||| || |||||| |||||| |||| | ||||||     || || || || |||||||  ||| ||||||||    
T  51874512 aattacttatttattccgccaattggaagaaagttttccttctaaactactatctcacaataagaacttttctttcaatatcaagcttctcgatcatttg 51874611  T
Q  96 ggttcttaagtcaaaccaatttatttctctgtctttctttctgaagattattttaccctttgtcgttccaaaaggttcttcaacgcaatgcaacggccca 195  Q
     |||||||||||||| |||  || ||||  |||||| ||| |||||| |||||| || |||  | ||| ||||||   ||||||||||   || ||||||    
T  51874612 agttcttaagtcaaatcaaactagttcttcgtctttttttgtgaagaatattttgccattttccattctaaaaggacgttcaacgcaagataatggccca 51874711  T
Q  196 acaataaagagtttaatccatgattcttttacacttagttcacccaaaattgatatgttacaagtagtcgtttggtcttcataagtgatcaaggcaatgt 295  Q
    ||||  || ||||| ||||||||||| || ||||||||||||||||||||||| || ||| |||||||| ||||  | | ||| | |||||||||||||     
T  51874712 acaaggaaaagtttgatccatgattccttcacacttagttcacccaaaattgaaatattaaaagtagtcatttgtacgtgatatgagatcaaggcaatgg 51874811  T
Q  296 atccatttaacaccaccaa 314  Q
    || ||||||||||||||||    
T  51874812 attcatttaacaccaccaa 51874830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 193 - 263
Target Start/End: Original strand, 44937797 - 44937867
Alignment:
Q  193 ccaacaataaagagtttaatccatgattcttttacacttagttcacccaaaattgatatgttacaagtagt 263  Q
    ||||||| |||||||||| ||||||||||||| || |  |||||||||||||||||||||| | |||||||    
T  44937797 ccaacaacaaagagtttagtccatgattctttcacgccgagttcacccaaaattgatatgtgaaaagtagt 44937867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 7435216 - 7435281
Alignment:
Q  185 gcaacggcccaacaataaagagtttaatccatgattcttttacacttagttcacccaaaattgata 250  Q
    |||||| ||||||||| ||||| ||| |||| |||||||||||||  | |||||| ||||||||||    
T  7435216 gcaacgacccaacaatgaagagcttagtccacgattcttttacaccaatttcacctaaaattgata 7435281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 44918486 - 44918546
Alignment:
Q  193 ccaacaataaagagtttaatccatgattcttttacacttagttcacccaaaattgatatgt 253  Q
    ||||||| |||||||||| |||| ||||||||  |||  |||||||| |||||||||||||    
T  44918486 ccaacaacaaagagtttagtccacgattctttcccaccaagttcacctaaaattgatatgt 44918546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 310
Target Start/End: Original strand, 21378470 - 21378587
Alignment:
Q  193 ccaacaataaagagtttaatccatgattcttttacacttagttcacccaaaattgatatgttacaagtagtcgtttggtcttcataagtgatcaaggcaa 292  Q
    |||| ||| |||||||| |||||||||||||| ||| ||| |||||| ||||||||||||||  |||||||| | |  || | ||| |||| || |||||    
T  21378470 ccaaaaatgaagagtttgatccatgattctttcacatttaattcacctaaaattgatatgtttaaagtagtcttcttttcgtgatatgtgaccagggcaa 21378569  T
Q  293 tgtatccatttaacacca 310  Q
    || || ||||||||||||    
T  21378570 tggattcatttaacacca 21378587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 264
Target Start/End: Original strand, 21374379 - 21374450
Alignment:
Q  193 ccaacaataaagagtttaatccatgattcttttacacttagttcacccaaaattgatatgttacaagtagtc 264  Q
    |||||||| |||||||| |||||||||||||| ||| |||  ||||| ||| ||||||||||| ||||||||    
T  21374379 ccaacaatgaagagtttgatccatgattctttcacatttaactcaccaaaatttgatatgttaaaagtagtc 21374450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 250
Target Start/End: Complemental strand, 34282012 - 34281937
Alignment:
Q  175 tcaacgcaatgcaacggcccaacaataaagagtttaatccatgattcttttacacttagttcacccaaaattgata 250  Q
    |||||| || ||||||| ||||| ||||||||||| ||||| |||||||| | ||  |||| ||||||||||||||    
T  34282012 tcaacgtaaggcaacggtccaaccataaagagtttgatccacgattctttgaaaccgagttgacccaaaattgata 34281937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 308
Target Start/End: Complemental strand, 29300161 - 29300039
Alignment:
Q  186 caacggcccaacaataaagagtttaatccatgattcttttacacttagttcacccaaaattgatatgttacaagtagtcgtttggtcttcataagtgatc 285  Q
    |||||| |||||| | ||||| ||  |||| ||||| |||| ||| || ||||||||||||||||||| | |||||||||| |  | || | | | ||||    
T  29300161 caacggtccaacattgaagagattggtccacgattcctttatactgagctcacccaaaattgatatgtgaaaagtagtcgtctttttttgaaatgagatc 29300062  T
Q  286 aaggcaatgtatccatttaacac 308  Q
    ||||||||| | |||||||||||    
T  29300061 aaggcaatggacccatttaacac 29300039  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 6117961 - 6117909
Alignment:
Q  193 ccaacaataaagagtttaatccatgattcttttacacttagttcacccaaaat 245  Q
    ||||||| ||||||||||||||| |||||||| ||||  ||||||||||||||    
T  6117961 ccaacaacaaagagtttaatccacgattctttaacaccaagttcacccaaaat 6117909  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 15338149 - 15338209
Alignment:
Q  193 ccaacaataaagagtttaatccatgattcttttacacttagttcacccaaaattgatatgt 253  Q
    ||||||| ||| |||||| ||||||||||||| || |  ||||||||||||||||||||||    
T  15338149 ccaacaacaaatagtttagtccatgattctttcacgccgagttcacccaaaattgatatgt 15338209  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 15427214 - 15427274
Alignment:
Q  193 ccaacaataaagagtttaatccatgattcttttacacttagttcacccaaaattgatatgt 253  Q
    ||||||| ||| |||||| ||||||||||||| || |  ||||||||||||||||||||||    
T  15427214 ccaacaacaaatagtttagtccatgattctttcacgccgagttcacccaaaattgatatgt 15427274  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 15518518 - 15518578
Alignment:
Q  193 ccaacaataaagagtttaatccatgattcttttacacttagttcacccaaaattgatatgt 253  Q
    ||||||| ||| |||||| ||||||||||||| || |  ||||||||||||||||||||||    
T  15518518 ccaacaacaaatagtttagtccatgattctttcacgccgagttcacccaaaattgatatgt 15518578  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 194 - 245
Target Start/End: Original strand, 12711784 - 12711835
Alignment:
Q  194 caacaataaagagtttaatccatgattcttttacacttagttcacccaaaat 245  Q
    |||||| ||||||||||||||| |||||||| ||||  ||||||||||||||    
T  12711784 caacaacaaagagtttaatccacgattctttaacaccgagttcacccaaaat 12711835  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 198 - 253
Target Start/End: Original strand, 15600584 - 15600639
Alignment:
Q  198 aataaagagtttaatccatgattcttttacacttagttcacccaaaattgatatgt 253  Q
    ||||||||||||| ||||||||||| ||||||   |||||||||||||||| ||||    
T  15600584 aataaagagtttagtccatgattctattacaccgggttcacccaaaattgagatgt 15600639  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 198 - 253
Target Start/End: Original strand, 15631867 - 15631922
Alignment:
Q  198 aataaagagtttaatccatgattcttttacacttagttcacccaaaattgatatgt 253  Q
    ||||||||||||| ||||||||||| ||||||   |||||||||||||||| ||||    
T  15631867 aataaagagtttagtccatgattctattacaccgggttcacccaaaattgaaatgt 15631922  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 26607133 - 26607075
Alignment:
Q  193 ccaacaataaagagtttaatccatgattcttttacacttagttcacccaaaattgatat 251  Q
    ||||||| |||||||||||||||||||||||| ||||  ||||| || |||| ||||||    
T  26607133 ccaacaacaaagagtttaatccatgattctttcacaccgagttcgcctaaaactgatat 26607075  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 27183951 - 27183901
Alignment:
Q  202 aagagtttaatccatgattcttttacacttagttcacccaaaattgatatg 252  Q
    ||||||||||||||||||||||| ||||  | |||||||||||| ||||||    
T  27183951 aagagtttaatccatgattctttgacaccaatttcacccaaaatcgatatg 27183901  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 13472933 - 13472986
Alignment:
Q  201 aaagagtttaatccatgattcttttacacttagttcacccaaaattgatatgtt 254  Q
    ||||||| || ||||||||||||| ||||  | |||||||||||||||||||||    
T  13472933 aaagagtctagtccatgattctttgacaccgatttcacccaaaattgatatgtt 13472986  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 201 - 248
Target Start/End: Complemental strand, 2703781 - 2703734
Alignment:
Q  201 aaagagtttaatccatgattcttttacacttagttcacccaaaattga 248  Q
    ||||||||||||||||||||| || ||||  |||||||||||||||||    
T  2703781 aaagagtttaatccatgattccttgacaccaagttcacccaaaattga 2703734  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 253
Target Start/End: Complemental strand, 42446431 - 42446353
Alignment:
Q  175 tcaacgcaatgcaacggcccaacaataaagagtttaatccatgattcttttacacttagttcacccaaaattgatatgt 253  Q
    ||||| ||||||||||| |||||||| | ||||||  |||||||||| || | |   ||||||||||||||||||||||    
T  42446431 tcaacacaatgcaacggtccaacaatgacgagtttggtccatgattccttgatagcaagttcacccaaaattgatatgt 42446353  T

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Target: scaffold0054 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 263
Target Start/End: Original strand, 39802 - 39890
Alignment:
Q  175 tcaacgcaatgcaacggcccaacaataaagagtttaatccatgattcttttacacttagttcacccaaaattgatatgttacaagtagt 263  Q
    |||||||||  |||||| |||||| |||||||||| ||||| ||||| || |  |  |||||||||||||||| ||||| | |||||||    
T  39802 tcaacgcaagacaacggtccaacagtaaagagtttgatccacgattccttaatgccgagttcacccaaaattgctatgtgaaaagtagt 39890  T

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