View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11024_low_5 (Length: 277)
Name: NF11024_low_5
Description: NF11024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11024_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 6 - 257
Target Start/End: Complemental strand, 2257442 - 2257192
Alignment:
| Q |
6 |
ttgtttgacaattgaagcaatgtaggcattcatgaacaaattttggatataacataaaagaaataagcaattggttgaaaaatcaccaccctgtgttgcc |
105 |
Q |
| |
|
||||||||||||||| ||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2257442 |
ttgtttgacaattga-gcaatgtagtcactcatgaacaaattttggatattacataaaagaaataagcaattggttgaaaaatcaccaccctgtgttgcc |
2257344 |
T |
|
| Q |
106 |
aaaatcacaaggcttcaatgaaatagttagcgaacgagacgggtgtgatgctcaatcgatccttccatgctacagagaccgggaacataaactcgacatc |
205 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||| | |
|
|
| T |
2257343 |
aaaatcacaaggcttcaatgaaataggtagcgaacgtgacgggtgtgatgctcaatcgatcattccatgccacagagaccgggaacataaacttgacaac |
2257244 |
T |
|
| Q |
206 |
aaatacatcggatttgagaaaatttgattcttcgcacggttttcatccatat |
257 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2257243 |
aaacacatcggatttgagaaaatttgattcttcgcacggttttcatccatat |
2257192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 52653593 - 52653636
Alignment:
| Q |
2 |
tgtattgtttgacaattgaagcaatgtaggcattcatgaacaaa |
45 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
52653593 |
tgtattgtttgacaattgatgcaatgtaaccattcatgaacaaa |
52653636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University