View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11025_high_1 (Length: 690)
Name: NF11025_high_1
Description: NF11025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11025_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 584; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 11 - 671
Target Start/End: Original strand, 46736481 - 46737129
Alignment:
| Q |
11 |
cagagattcctagatgctgtccaagtgcattagcaggtataatgaaaagatgctgggacaagaatccagaaaagcgtccggaaatgaaagatgtggtgac |
110 |
Q |
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| T |
46736481 |
cagagattcctagatgctgtccaagtgcattagcagatataatgaaaagatgctgggacaagaatccagaaaagcgtccggaaatgaaagatgtggtgac |
46736580 |
T |
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| Q |
111 |
aatgttggaagaaattgatacaagcaaaggaggcggaatgataagagaagaccagactccattttgtttttgttttaaacctgctcgtggcccataatag |
210 |
Q |
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| T |
46736581 |
aatgttggaaaaaattgatacaagcaaaggaggcggaatgataagagaagaccagactccattttgtttttgttttaaacctgctcgtggcccataataa |
46736680 |
T |
|
| Q |
211 |
tcatactcaatttttaatgagtattattatgtacattaagtaagtcattgtcgtttatggaaatatcggagttgttgtctatggaaatatcggaggtatg |
310 |
Q |
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| T |
46736681 |
tcatactcaatttttaatgagtataattatgtacattaagtaagtcattgtcgtctatggaaatatcggagttgttgtctatggaaatatcggaggtatg |
46736780 |
T |
|
| Q |
311 |
ttgcagccttcaactgtcatttgttggcttgcttgtcaatttactagttgacttcatatatattctatattagatattgaaaaagatattgaactagtat |
410 |
Q |
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| T |
46736781 |
ttgcagccttcaactgtcatttgttggcttgcttgtcaatttactggttgacttcatatatattttatatt------------agatattgaactagtat |
46736868 |
T |
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| Q |
411 |
tgtgttgcttgctggtattgtgagtcattgatttatgggatactcaatgtgtcgtctatgcattcatgactcatgagcattgatatctcttgttttgttg |
510 |
Q |
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| T |
46736869 |
tgtgttgcttgctggtattgtgagtcattgatttatgggatactcaatgtgtcgtctatgcattcatgactcatgagcattgatatctcttgttttgttg |
46736968 |
T |
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| Q |
511 |
tttgagagattggatgtgtgctatgggataaaaggagcaattgttttttgaacagaacgtggatgaatgctatatcaacaggggatgttgttgctcatag |
610 |
Q |
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| T |
46736969 |
tttgagagattggatgtgtgctatgggataaaaggagcaattgttttttgaacagaacgtggatgaatgctatatcaacaggggatgttgttgctcatag |
46737068 |
T |
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| Q |
611 |
aaaaccatgtatggatcatgatcacattccatattaatgaaggcatctgcactaccattag |
671 |
Q |
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| T |
46737069 |
aaaaccatgtatggatcatgatcgcattccatattaatgaaggcatctgcacaaccattag |
46737129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 986195 - 986262
Alignment:
| Q |
85 |
cgtccggaaatgaaagatgtggtgacaatgttggaagaaattgatacaagcaaaggaggcggaatgat |
152 |
Q |
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| T |
986195 |
cgtccggaaatgaaggatgtggtgataatgctagaagcactggatacaagcaaaggtggtggaatgat |
986262 |
T |
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