View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11025_high_11 (Length: 326)
Name: NF11025_high_11
Description: NF11025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11025_high_11 |
 | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 19)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 9840833 - 9841150
Alignment:
| Q |
1 |
ttaaggctatagagttacacaattgtccagaactaaggggatatttgcccaccaaccttccttccatagaaaaaattgtaatatcaggttgttctcatct |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9840833 |
ttaaggctatagagttacgcaattgtccagaactaaggggatatttgcccaccaaccttccttccatagaaaaaattgtaatatcaggttgttctcatct |
9840932 |
T |
|
| Q |
101 |
attggaaacaccatctactctgcattggttgtcttcaatnnnnnnnntgaatatctatgggcttggtgaaagttcccaattgccattgcttgagagtgat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
9840933 |
attggaaacaccatctactctgcattggttgtcttcaataaaaaaaatgaatatcaatgggcttggtgaaagttcccaattgtcattgcttgagagtgat |
9841032 |
T |
|
| Q |
201 |
tctccgtgtatgatgcaagaagtagttatttgtgaag-gtgttaagttattatttgtaccaaaattgattctgagaagcacttgtcttacacacttgaga |
299 |
Q |
| |
|
||||| |||||||||||||| ||||| | ||| ||| ||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9841033 |
tctccatgtatgatgcaagatgtagtga-ttgaaaagtgtgttaaactattagttgttccaaaattgattctgagaagcacttgtcttacacacttgaga |
9841131 |
T |
|
| Q |
300 |
ctcgattctctttcatctc |
318 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
9841132 |
ctcgattctctttcttctc |
9841150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 10373939 - 10373619
Alignment:
| Q |
1 |
ttaaggctatagagttacacaattgtccagaactaaggggatatttgcccaccaaccttccttccatagaaaaaattgtaatatcaggttgttctcatct |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10373939 |
ttaaggctatagagttacgtaattgtccagaactaaggggacatttgcccaccaaccttccttccatagaagaaattgtaatatcaggttgttctcatct |
10373840 |
T |
|
| Q |
101 |
attggaaacaccatctactctgcattggttgtcttcaatnnnnnnnntgaatatctatgggcttg---gtgaaagttcccaattgccattgcttgagagt |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||| || |||||||||||||| |
|
|
| T |
10373839 |
attggaaacaccatctactctgcattggttgtcttcaataaaagaaatgaatatcaatgggcttgagagtgaaagttcccaactgtcattgcttgagagt |
10373740 |
T |
|
| Q |
198 |
gattctccgtgtatgatgcaagaagtagttatttgtgaaggtgttaagttattatttgtaccaaaattgattctgagaagcacttgtcttacacacttga |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10373739 |
gattctccgtgtatgatgcaagaagtagttattcgtgaatgtgttaagttattagctgttccaaaattgattctgagaagcacttgtcttacacacttgg |
10373640 |
T |
|
| Q |
298 |
gactcgattctctttcatctc |
318 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
10373639 |
aactcgattctctttcttctc |
10373619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 9851714 - 9852031
Alignment:
| Q |
1 |
ttaaggctatagagttacacaattgtccagaactaaggggatatttgcccaccaaccttccttccatagaaaaaattgtaatatcaggttgttctcatct |
100 |
Q |
| |
|
||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9851714 |
ttaaggcaatagagttacgtgattgtccaaaactaaggggatatttgcccaccaaccttccttccatagaagaaattgtaatatcaggttgttctcatct |
9851813 |
T |
|
| Q |
101 |
attggaaacaccatctactctgcattggttgtcttcaatnnnnnnnntgaatatctatgggcttggtgaaagttcccaattgccattgcttgagagtgat |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
9851814 |
attggaaacaccatctactctgcgttggttgtcttcaataaaaaaaatgaatatcaatgggcttggtgaaagttcccaattgtcattgcttgagagtgat |
9851913 |
T |
|
| Q |
201 |
tctccgtgtatgatgcaagaagtagttatttgtgaag-gtgttaagttattatttgtaccaaaattgattctgagaagcacttgtcttacacacttgaga |
299 |
Q |
| |
|
|||||||||||||||||||| |||| | ||| ||| |||||||| ||||| ||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9851914 |
tctccgtgtatgatgcaagatgtagaga-ttgaaaagtgtgttaagctattagctgtgccaaaattgattatgagaagcacttgtcttacacacttgaga |
9852012 |
T |
|
| Q |
300 |
ctcgattctctttcatctc |
318 |
Q |
| |
|
|||||||| ||||| |||| |
|
|
| T |
9852013 |
ctcgattcactttcttctc |
9852031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 10128900 - 10129217
Alignment:
| Q |
1 |
ttaaggctatagagttacacaattgtccagaactaaggggatatttgcccaccaaccttccttccatagaaaaaattgtaatatcaggttgttctcatct |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10128900 |
ttaaggctatagagttatggaattgtccagaactaaggggacatttgcccaccaaccttccttccatagaagaaattgtaatatcaggttgttctcatct |
10128999 |
T |
|
| Q |
101 |
attggaaacaccatctactctgcattggttgtcttcaatnnnnnnnntgaatatctatgggcttggtgaaagttcccaattgccattgcttgagagtgat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10129000 |
attggaaacaccatctactctgcattggttgtcttcaataaaaaaaatgaatatcaatgggcttggtgaaagttcccaattgtcattgcttgagagtgat |
10129099 |
T |
|
| Q |
201 |
tctccgtgtatgatgcaagaagtagttatttgtgaaggtgttaagttattatttgtaccaaaattgattctgagaagcacttgtcttacacacttgagac |
300 |
Q |
| |
|
|||||||||||||||||| | |||| ||| | || |||| ||||| ||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10129100 |
tctccgtgtatgatgcaacatgtagcgattcacaactgttctaagctattagctgtgccaaaattgattctgaaaagcacttgtcttacacacttgagac |
10129199 |
T |
|
| Q |
301 |
tcgattctctttcatctc |
318 |
Q |
| |
|
|| |||||||||| |||| |
|
|
| T |
10129200 |
tctattctctttcttctc |
10129217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 10519460 - 10519777
Alignment:
| Q |
1 |
ttaaggctatagagttacacaattgtccagaactaaggggatatttgcccaccaaccttccttccatagaaaaaattgtaatatcaggttgttctcatct |
100 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||| |
|
|
| T |
10519460 |
ttaaggctataaagttacgtaattgtccagaactaaggggacatttgcccaccaaccttccttccatagaagaaattgtaataaaaggttgtgttcatct |
10519559 |
T |
|
| Q |
101 |
attggaaacaccatctactctgcattggttgtcttcaatnnnnnnnntgaatatctatgggcttggtgaaagttcccaattgccattgcttgagagtgat |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10519560 |
attggaaacaccatctactttgcattggttgtcttcaataaaaaaaatgaatatcaatgggcttggtgaaagttcccaattgtcattgcttgagagtgat |
10519659 |
T |
|
| Q |
201 |
tctccgtgtatgatgcaagaagtagttatttgtgaaggtgttaagttattatttgtaccaaaattgattctgagaagcacttgtcttacacacttgagac |
300 |
Q |
| |
|
||||| |||||||||||||| |||| ||| | |||||||| ||||| ||| |||||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
10519660 |
tctccttgtatgatgcaagatgtagagattaaaaagtgtgttaagctattagctgtgccaaaattgattctgaaaagcacttgtcttacacacttgggac |
10519759 |
T |
|
| Q |
301 |
tcgattctctttcatctc |
318 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
10519760 |
tcgattctctttcttctc |
10519777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 10033975 - 10034295
Alignment:
| Q |
1 |
ttaaggctatagagttacacaattgtccagaactaaggggatatttgcccaccaaccttccttccatagaaaaaattgtaatatcaggttgttctcatct |
100 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10033975 |
ttaaggctatagagttatataattgtccagaactaaggggacatttgcccaccaaccttccttccatagaaaaaattgtaatatcaggttgttctcatct |
10034074 |
T |
|
| Q |
101 |
attggaaacaccatctactctgcattggttgtcttcaatnnnnnnnntgaatatctatgggcttg---gtgaaagttcccaattgccattgcttgagagt |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||| || |||||||||||||| |
|
|
| T |
10034075 |
attggaaacaccatctactctgcattggttgtcttcaataaaaaaaatgaatatcaatgggcttgagagtgaaagttcccaactgtcattgcttgagagt |
10034174 |
T |
|
| Q |
198 |
gattctccgtgtatgatgcaagaagtagttatttgtgaaggtgttaagttattatttgtaccaaaattgattctgagaagcacttgtcttacacacttga |
297 |
Q |
| |
|
||||||||||||||||||||| | |||| ||| | || |||| ||||| ||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10034175 |
gattctccgtgtatgatgcaacatgtagcgattcacaactgttctaagctattagctgtgccaaaattgattttgagaagcacttgtcttacacacttgg |
10034274 |
T |
|
| Q |
298 |
gactcgattctctttcatctc |
318 |
Q |
| |
|
|||| |||||||||| |||| |
|
|
| T |
10034275 |
aactcaattctctttcttctc |
10034295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 6 - 311
Target Start/End: Original strand, 10262678 - 10262986
Alignment:
| Q |
6 |
gctatagagttacacaattgtccagaactaaggggatatttgcccaccaaccttccttccatagaaaaaattgtaatatcaggttgttctcatctattgg |
105 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||| | ||||||| | ||| ||||||| ||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
10262678 |
gctatggagttacataattgtccagaactaagggaacatttgcctagcaaacttccttgcatagaagaaattgtaataaaaggttgttctcatctattgg |
10262777 |
T |
|
| Q |
106 |
aaaca---ccatctactctgcattggttgtcttcaatnnnnnnnntgaatatctatgggcttggtgaaagttcccaattgccattgcttgagagtgattc |
202 |
Q |
| |
|
||||| ||| ||| ||||||||||||| ||| | | |||||| ||||||||| || ||| |||||||| ||||||||||||||||||| |
|
|
| T |
10262778 |
aaacagagccaaacactttgcattggttgtcgtcagtaaagaaaattaatatcgatgggcttgatggaaggacccaattgtcattgcttgagagtgattc |
10262877 |
T |
|
| Q |
203 |
tccgtgtatgatgcaagaagtagttatttgtgaaggtgttaagttattatttgtaccaaaattgattctgagaagcacttgtcttacacacttgagactc |
302 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
10262878 |
tccgtgtatgatgcaagaagtagttattcgtgaatgtgttaagttattagctgttccaaaattgattctgagaagcacttgtctaacacacttgaaactc |
10262977 |
T |
|
| Q |
303 |
gattctctt |
311 |
Q |
| |
|
||||||| |
|
|
| T |
10262978 |
agttctctt |
10262986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 12 - 318
Target Start/End: Complemental strand, 10432127 - 10431818
Alignment:
| Q |
12 |
gagttacacaattgtccagaactaaggggatatttgcccaccaaccttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaaca- |
110 |
Q |
| |
|
|||||||| |||||||| |||||||||||| | ||||| | ||||||||||| ||||||| |||||| ||||||||||||||||| ||| |||||||| |
|
|
| T |
10432127 |
gagttacataattgtcctgaactaaggggacaattgcctagcaaccttccttgcatagaagaaattgatatatcaggttgttctcaactactggaaacag |
10432028 |
T |
|
| Q |
111 |
--ccatctactctgcattggttgtcttcaatnnnnnnnntgaatatctatgggcttggtgaaagttcccaattgccattgcttgagagtgattctccgtg |
208 |
Q |
| |
|
||| ||| ||||||||||||| ||||| | |||||| ||||||||| | ||| || | ||| ||||||||||||||||||||||||| |
|
|
| T |
10432027 |
agccaaacactatgcattggttgtcgtcaataaagaaagttaatatcaatgggcttgacggaaggaccaatttgtcattgcttgagagtgattctccgtg |
10431928 |
T |
|
| Q |
209 |
tatgatgcaagaagtagttatttgtgaaggtgttaagttattatttgtaccaaaattgattctgagaagcacttgtcttacacacttgagactcgattct |
308 |
Q |
| |
|
|||||||||| | ||||| ||| | |||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10431927 |
tatgatgcaacatgtagtgattgaaaactgtgttaagctattagttgtgccaaaattgattctgagaagcacttgtcttacacacttgagactcgattct |
10431828 |
T |
|
| Q |
309 |
ctttcatctc |
318 |
Q |
| |
|
||||| |||| |
|
|
| T |
10431827 |
ctttcttctc |
10431818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 21 - 318
Target Start/End: Complemental strand, 11780056 - 11779759
Alignment:
| Q |
21 |
aattgtccagaactaaggggatatttgcccaccaaccttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaacaccatctactc |
120 |
Q |
| |
|
|||||||| |||||||||||| ||||||| ||||||||||||| ||| ||| ||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
11780056 |
aattgtcctgaactaaggggacatttgcctaccaaccttccttgcatcgaagaaattgtaataaaaggttgttctcatctattggaaaaaccatctactt |
11779957 |
T |
|
| Q |
121 |
tgcattggttgtcttcaatnnnnnnnntgaatatctatgggcttggtgaaagttcccaattgccattgcttgagagtgattctccgtgtatgatgcaaga |
220 |
Q |
| |
|
||||||||||||| ||||| |||||||| | || |||||||||| | |||||| |||||||||| |||||||||| | |||||||||| | |
|
|
| T |
11779956 |
tgcattggttgtcgtcaataaaagaaatgaatatcaaaggacttggtgaaaagacacaattgtcattgcttgatagtgattctctatctatgatgcaaca |
11779857 |
T |
|
| Q |
221 |
agtagttatttgtgaag-gtgttaagttattatttgtaccaaaattgattctgagaagcacttgtcttacacacttgagactcgattctctttcatctc |
318 |
Q |
| |
|
||||| | ||| ||| ||| | || ||| | |||| |||||||||||| ||||||||| |||||||||| ||||||||||| |||||||||| |||| |
|
|
| T |
11779856 |
tgtagtga-ttgaaaagtgtgctgagctatcagttgtgccaaaattgattttgagaagcatttgtcttacatacttgagactccattctctttcttctc |
11779759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 6 - 317
Target Start/End: Original strand, 10197653 - 10197967
Alignment:
| Q |
6 |
gctatagagttacacaattgtccagaactaaggggatatttgcccaccaaccttccttccatagaaaaaattgtaatatcaggttgttctcatctattgg |
105 |
Q |
| |
|
||||| ||||||| ||||||| ||||||||||||| ||||||| | ||||||||||| |||| || ||||||||||| |||||||||||||||||||| |
|
|
| T |
10197653 |
gctatggagttacgtaattgtcgagaactaaggggacatttgcctagcaaccttccttgcataaaagaaattgtaataaaaggttgttctcatctattgg |
10197752 |
T |
|
| Q |
106 |
aaaca---ccatctactctgcattggttgtcttcaatnnnnnnnntgaatatctatgggcttggtgaaagttcccaattgccattgcttgagagtgattc |
202 |
Q |
| |
|
||||| ||| ||| ||||||||||||| ||| | | |||||| ||||| |||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
10197753 |
aaacagagccaaacactttgcattggttgtcgtcagtaaagaaaattaatatcgatgggtttggtgaaaggacccaattgtcattgcttgagagtgattc |
10197852 |
T |
|
| Q |
203 |
tccgtgtatgatgcaagaagtagttatttgtgaaggtgttaagttattatttgtaccaaaattgattctgagaagcacttgtcttacacacttgagactc |
302 |
Q |
| |
|
||||||||||||| |||| ||||| ||| | | ||| |||| ||||| | | |||||| |||||| ||||||||||||||| |||||||| |||| |
|
|
| T |
10197853 |
tccgtgtatgatggaagatgtagtgattcgaaagtgtgctaagctattagctatgccaaaaatgattccaagaagcacttgtcttcaacacttgaaactc |
10197952 |
T |
|
| Q |
303 |
gattctctttcatct |
317 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
10197953 |
tattctctttcatct |
10197967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 21 - 318
Target Start/End: Original strand, 11771229 - 11771526
Alignment:
| Q |
21 |
aattgtccagaactaaggggatatttgcccaccaaccttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaacaccatctactc |
120 |
Q |
| |
|
|||||||| |||||||||| | |||| || ||||||||||||| ||| ||| |||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
11771229 |
aattgtcctgaactaagggtacattttcctaccaaccttccttgcatcgaagaaattgtaatcaaaggttgttctcatctattggaaaaaccatctactt |
11771328 |
T |
|
| Q |
121 |
tgcattggttgtcttcaatnnnnnnnntgaatatctatgggcttggtgaaagttcccaattgccattgcttgagagtgattctccgtgtatgatgcaaga |
220 |
Q |
| |
|
||||||||||||| ||||| |||||||| | || |||||||||| | || ||| |||||||||| |||||||||| | |||||||||| | |
|
|
| T |
11771329 |
tgcattggttgtcgtcaataaaagaaatgaatatcaacggccttggtgaaaagacacagttgtcattgcttgatagtgattctctatctatgatgcaaca |
11771428 |
T |
|
| Q |
221 |
agtagttatttgtgaag-gtgttaagttattatttgtaccaaaattgattctgagaagcacttgtcttacacacttgagactcgattctctttcatctc |
318 |
Q |
| |
|
||||| | ||| ||| |||| || ||| | |||| |||||||||||| |||||||||||||||||||| ||||||||||| |||||||||| |||| |
|
|
| T |
11771429 |
tgtagtga-ttgaaaagtatgttgagctatcagttgtgccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctc |
11771526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 21 - 317
Target Start/End: Original strand, 10090786 - 10091085
Alignment:
| Q |
21 |
aattgtccagaactaaggggatatttgcccaccaaccttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaaca---ccatcta |
117 |
Q |
| |
|
||||||| ||||||||||||| ||||||| | ||||||||||| |||| || ||||||||||| ||||||||||||||||||||||||| ||| | |
|
|
| T |
10090786 |
aattgtcgagaactaaggggacatttgcctagcaaccttccttgcataaaagaaattgtaataaaaggttgttctcatctattggaaacagagccaaaca |
10090885 |
T |
|
| Q |
118 |
ctctgcattggttgtcttcaatnnnnnnnntgaatatctatgggcttggtgaaagttcccaattgccattgcttgagagtgattctccgtgtatgatgca |
217 |
Q |
| |
|
|| ||||||||||||| ||| | | |||||| ||||| |||||||||| |||||||| |||||||||||||||||||||| ||||||||| | |
|
|
| T |
10090886 |
ctttgcattggttgtcgtcagtaaagaaaattaatatcgatgggtttggtgaaaggacccaattgtcattgcttgagagtgattctccatgtatgatgga |
10090985 |
T |
|
| Q |
218 |
agaagtagttatttgtgaaggtgttaagttattatttgtaccaaaattgattctgagaagcacttgtcttacacacttgagactcgattctctttcatct |
317 |
Q |
| |
|
||| ||||| ||| | | ||| |||| ||||| | | |||||| |||||| ||||||||||||||| |||||||| |||| |||||||||||||| |
|
|
| T |
10090986 |
agatgtagtgattcgaaagtgtgctaagctattagctatgccaaaaatgattccaagaagcacttgtcttcaacacttgaaactctattctctttcatct |
10091085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 6 - 303
Target Start/End: Complemental strand, 10361890 - 10361593
Alignment:
| Q |
6 |
gctatagagttacacaattgtccagaactaaggggatatttgcccaccaaccttccttccatagaaaaaattgtaatatcaggttgttctcatctattgg |
105 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||| ||||||| | ||||||||||| ||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
10361890 |
gctatggagttacataattgtccagaactaaggggacatttgccgagcaaccttccttgcatagaagaaattgtaatacaaggttgttctcatctattgg |
10361791 |
T |
|
| Q |
106 |
aaacaccatctactctgcattggttgtcttcaatnnnnnnnntgaatatctatgggcttggtgaaagttcccaattgccattgcttgagagtgattctcc |
205 |
Q |
| |
|
||||| | ||| ||||||||||||| ||||| | || || ||||||||| || ||| |||||||| |||| |||| ||| |||||||| |
|
|
| T |
10361790 |
aaacagagcccactttgcattggttgtcgtcaataaaaaattttaagattgatgggcttgatggaaggacccaattgtcatttcttgggagcgattctcc |
10361691 |
T |
|
| Q |
206 |
gtgtatgatgcaagaagtagttatttgtgaaggtgttaagttattatttgtaccaaaattgattctgagaagcacttgtcttacacacttgagactcg |
303 |
Q |
| |
|
|||||||||||| | | ||| ||| | | | || | | | || ||| |||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
10361690 |
atgtatgatgcaacatgcagtgattcaaaagtgcgctatgctgtcatctgtgccaaaattgattctgagaagcacttgtcttacactcttgggactcg |
10361593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 21 - 318
Target Start/End: Original strand, 10582605 - 10582903
Alignment:
| Q |
21 |
aattgtccagaactaaggggatatttgcccaccaaccttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaacaccatctactc |
120 |
Q |
| |
|
|||||||| |||||| |||| ||||||| | | | ||||||| ||||||| |||||| |||| ||||||| |||||||||||||||| | ||| |
|
|
| T |
10582605 |
aattgtcccaaactaaagggacatttgcctagccatcttccttgcatagaagaaattgaaatagaaggttgtgttcatctattggaaacagagcccactt |
10582704 |
T |
|
| Q |
121 |
tgcattggttgtcttcaatnnnnnnnn-tgaatatctatgggcttggtgaaagttcccaattgccattgcttgagagtgattctccgtgtatgatgcaag |
219 |
Q |
| |
|
||||||||||||| ||||| | || || |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10582705 |
tgcattggttgtcgtcaataaaaaaaaattaagattgatgggcttggtgaaaggacccaattgttattgcttgagagtgattctccgtgtatgatgcaag |
10582804 |
T |
|
| Q |
220 |
aagtagttatttgtgaaggtgttaagttattatttgtaccaaaattgattctgagaagcacttgtcttacacacttgagactcgattctctttcatctc |
318 |
Q |
| |
|
| | ||| || | | ||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
10582805 |
atgcagtgatggcaaactgcgttaacctattagctgtgccaaaattgattctgagaagcacttgtcttacacacttgagactctattctctttcttctc |
10582903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 55 - 296
Target Start/End: Original strand, 10502612 - 10502852
Alignment:
| Q |
55 |
accttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaacaccatctactctgcattggttgtcttcaatnnnnnnnntgaatat |
154 |
Q |
| |
|
||||| ||| ||||||| ||||||||||| ||||||| ||||||||||||||||||| ||||| |||||||| |||| ||| | ||||| |
|
|
| T |
10502612 |
acctttctttcatagaagaaattgtaatagaaggttgtgctcatctattggaaacaccgcctactttgcattggctgtcgtcattgaaaaaaggtaatat |
10502711 |
T |
|
| Q |
155 |
ctatgggcttggtgaaagttcccaattgccattgcttgagagtgattctccgtgtatgatgcaagaagtagttatttgtgaaggtgttaagttattattt |
254 |
Q |
| |
|
| ||||||||||||||| | ||||| ||||||||| |||||| ||||| |||||||||||| | ||||| |||||| |||||| | |||||| | |
|
|
| T |
10502712 |
caatgggcttggtgaaaagactcaattatcattgcttgggagtgactctccatgtatgatgcaacatgtagtcatttgtaggtgtgttacgctattatct |
10502811 |
T |
|
| Q |
255 |
gtaccaaaattgattctgagaagcacttgtcttacacacttg |
296 |
Q |
| |
|
| |||||| ||||| ||||||||||||||||| ||||||| |
|
|
| T |
10502812 |
attccaaaaatgatt-tgagaagcacttgtcttcaacacttg |
10502852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 258 - 318
Target Start/End: Original strand, 10665698 - 10665758
Alignment:
| Q |
258 |
ccaaaattgattctgagaagcacttgtcttacacacttgagactcgattctctttcatctc |
318 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||| |||| ||||| |||| |
|
|
| T |
10665698 |
ccaaaattgattatgagaagcacttgtcttacacacttggcactctattcactttcttctc |
10665758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 128
Target Start/End: Original strand, 10530633 - 10530749
Alignment:
| Q |
12 |
gagttacacaattgtccagaactaaggggatatttgcccaccaaccttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaacac |
111 |
Q |
| |
|
|||||| | |||||||||||| | |||||| |||| || | | |||| ||||||||||| ||||| |||| ||||||| ||| |||||||||||||| |
|
|
| T |
10530633 |
gagttatataattgtccagaatttaggggacattttcctagccacctatcttccatagaagaaattcaaatagaaggttgtgctcgtctattggaaacac |
10530732 |
T |
|
| Q |
112 |
catctactctgcattgg |
128 |
Q |
| |
|
|| |||| |||||||| |
|
|
| T |
10530733 |
cacatactttgcattgg |
10530749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 10079406 - 10079515
Alignment:
| Q |
22 |
attgtccagaactaaggggatatttgcccaccaaccttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaacaccatctactct |
121 |
Q |
| |
|
||||||| ||||||| ||| |||| || | | ||||||||| ||||||| ||||| | ||| ||||||| | ||||||||||||||||| ||||| | |
|
|
| T |
10079406 |
attgtcctgaactaaaggggcattttcctagcgaccttccttgcatagaagaaattatgataaaaggttgtgcgaatctattggaaacaccacctacttt |
10079505 |
T |
|
| Q |
122 |
gcattggttg |
131 |
Q |
| |
|
| |||||||| |
|
|
| T |
10079506 |
ggattggttg |
10079515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 10679424 - 10679525
Alignment:
| Q |
12 |
gagttacacaattgtccagaactaaggggatatttgcccaccaaccttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaacac |
111 |
Q |
| |
|
|||||| | |||||||||||||| ||| || |||| |||| | |||| ||||||||||| ||||| |||| ||||| | ||| |||||||||||||| |
|
|
| T |
10679424 |
gagttatataattgtccagaacttaggcgacattttcccagccacctatcttccatagaagaaattcaaatagaaggttatgctcgtctattggaaacac |
10679523 |
T |
|
| Q |
112 |
ca |
113 |
Q |
| |
|
|| |
|
|
| T |
10679524 |
ca |
10679525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 55696 - 55379
Alignment:
| Q |
1 |
ttaaggctatagagttacacaattgtccagaactaaggggatatttgcccaccaaccttccttccatagaaaaaattgtaatatcaggttgttctcatct |
100 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
55696 |
ttaaggcaatagagttacgtgattgtccagaactaaggggacatttgcccaccaaccttccttccatagaagaaattgtaatatcaggttgttctcatct |
55597 |
T |
|
| Q |
101 |
attggaaacaccatctactctgcattggttgtcttcaatnnnnnnnntgaatatctatgggcttggtgaaagttcccaattgccattgcttgagagtgat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
55596 |
attggaaacaccatctactctgcattggttgtcttcaataaaaataatgaatatcaatgggcttggtgaaagttcccaattgtcattgcttgagagtgat |
55497 |
T |
|
| Q |
201 |
tctccgtgtatgatgcaagaagtagttatttgtgaaggtgttaagttattatttgtaccaaaattgattctgagaagcacttgtcttacacacttgagac |
300 |
Q |
| |
|
|||||||||||||||||| | |||| ||| | || |||| ||||| ||| |||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
55496 |
tctccgtgtatgatgcaacatgtagcgattcacaactgttctaagctattagctgtgccaaaattgattctgaaaagcacttgtcttacacacttgaaac |
55397 |
T |
|
| Q |
301 |
tcgattctctttcatctc |
318 |
Q |
| |
|
|| |||| ||||| |||| |
|
|
| T |
55396 |
tccattcactttcttctc |
55379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 7 - 317
Target Start/End: Original strand, 26908869 - 26909179
Alignment:
| Q |
7 |
ctatagagttacacaattgtccagaactaaggggatatttgcccaccaaccttccttccatagaaaaaattgtaatatcaggttgttctcatctattgga |
106 |
Q |
| |
|
|||| ||||| || ||||||||| |||||| ||| |||||| | ||||||||||| ||||||| ||||||||||| |||||| | |||||||||||| |
|
|
| T |
26908869 |
ctattgagttgcataattgtccaaaactaaaaggacttttgcctagcaaccttccttgcatagaagaaattgtaataaaaggttgctatcatctattgga |
26908968 |
T |
|
| Q |
107 |
aacaccatctactctgcattggttgtcttcaatnnnnnnnntgaatatctatgggcttggtgaaagttcccaattgccattgcttgagagtgattctccg |
206 |
Q |
| |
|
||||||||||||| | |||||| |||| || || | |||||| ||||||||||| |||| || |||| |||||||| ||||||||||||| |
|
|
| T |
26908969 |
aacaccatctactttacattgggtgtcgtccataccgaaaattaatatccatgggcttggtaaaaggaccatattgtcattgcttaagagtgattctccc |
26909068 |
T |
|
| Q |
207 |
tgtatgatgcaagaagtagttatttgtgaaggtgttaagttattatttgtaccaaaattgattctgagaagcacttgtcttacacacttgagactcgatt |
306 |
Q |
| |
|
|||||||||||||| ||||| ||| | ||||| | ||||| | | ||||||||||||||||||||||| |||||| |||||||| |||| ||| |
|
|
| T |
26909069 |
tgtatgatgcaagatgtagtgattcaaaattgtgttgggctattaggtttgccaaaattgattctgagaagcacatgtcttcaacacttgaaactctatt |
26909168 |
T |
|
| Q |
307 |
ctctttcatct |
317 |
Q |
| |
|
||||||||||| |
|
|
| T |
26909169 |
ctctttcatct |
26909179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 139
Target Start/End: Original strand, 11487021 - 11487148
Alignment:
| Q |
12 |
gagttacacaattgtccagaactaaggggatatttgcccaccaaccttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaacac |
111 |
Q |
| |
|
|||||||| | ||||| || ||||||||| ||||||| | | ||||||||| ||||||||||||| ||| |||||||| | ||||| |||||||||| |
|
|
| T |
11487021 |
gagttacatagttgtcatgagctaaggggacatttgcctagccaccttccttgcatagaaaaaattaatataacaggttgtgcccatcttttggaaacac |
11487120 |
T |
|
| Q |
112 |
catctactctgcattggttgtcttcaat |
139 |
Q |
| |
|
||||| || ||||||||||||| ||||| |
|
|
| T |
11487121 |
catctgctttgcattggttgtcgtcaat |
11487148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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