View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11025_high_19 (Length: 251)
Name: NF11025_high_19
Description: NF11025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11025_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 4243967 - 4244184
Alignment:
| Q |
17 |
atcttcaaacaaacaacatcaccaacaacaatatcgaatattgataccttttgttggcgcccactacgaaccaaatcaatttgaatatcattgctcactt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243967 |
atcttcaaacaaacaacatcaccaacaacaatatcgaatattgataccttttgtcggcgcccactacgaaccaaatcaatttgaatatcattgctcactt |
4244066 |
T |
|
| Q |
117 |
gagacaatttatcaaattgtttgttttgtttaaagttgcttattgcagacattgaaataacaatgaaaacagctagaaaaatgctaccaccatcatacca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4244067 |
gagacaatttatcaaattgtttgttttgtttaaagttgcttattgcagacattgaaataacaatgaaaacagctagaaaaatgctgccaccatcatacca |
4244166 |
T |
|
| Q |
217 |
accttctttgattccatg |
234 |
Q |
| |
|
|||||||||||||||||| |
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| T |
4244167 |
accttctttgattccatg |
4244184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 6187023 - 6187240
Alignment:
| Q |
17 |
atcttcaaacaaacaacatcaccaacaacaatatcgaatattgataccttttgttggcgcccactacgaaccaaatcaatttgaatatcattgctcactt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| ||||||||| | | || ||||| |||||||||||||||||||| |||||||| |||| |
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| T |
6187023 |
atcttcaaacaaacaacatcaccaacaacaatatcaaatatagatacctttagccgacgaccacttcgaaccaaatcaatttgaatgtcattgctaactt |
6187122 |
T |
|
| Q |
117 |
gagacaatttatcaaattgtttgttttgtttaaagttgcttattgcagacattgaaataacaatgaaaacagctagaaaaatgctaccaccatcatacca |
216 |
Q |
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|
||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||| |||||||||||||| ||||||||||||||||||||||| |
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|
| T |
6187123 |
gagacaatttatcaaattgtttgttttgtttgaagttgcttattgatgacatcgaaataacgatgaaaacagctaggaaaatgctaccaccatcatacca |
6187222 |
T |
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| Q |
217 |
accttctttgattccatg |
234 |
Q |
| |
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|||||||||||||||||| |
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|
| T |
6187223 |
accttctttgattccatg |
6187240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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