View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11025_high_7 (Length: 402)
Name: NF11025_high_7
Description: NF11025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11025_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 32966620 - 32966746
Alignment:
| Q |
20 |
caaaagacttatacttggtagatttttaaaaatgttatttgtggtttttctgcagtggtcatgggaaacaatagtcatggggatttccttcttggtaata |
119 |
Q |
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| T |
32966620 |
caaaagacttatacttggtagatttttaaaaatgttatttgtggtttttctgcagtggtcatgggaaacaatagtcatggggatttccttcttggtaata |
32966719 |
T |
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| Q |
120 |
cttctgctcgcaagacagattgtaaga |
146 |
Q |
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| T |
32966720 |
cttctgctcgcaagacagattgtaaga |
32966746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 286 - 382
Target Start/End: Original strand, 32966886 - 32966982
Alignment:
| Q |
286 |
ttcctcaaactaactatgatcatgttttaaacttgatctcaaacaaaaatgttttaaacttttcacatatgataaattcagaaatctttggaagtct |
382 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32966886 |
ttcctcaaactaactatgatcatgttttaaacttcatctcaaacaaaaatgttttaaacttttcacatatgataaattcagaaatctttggaagtct |
32966982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 32955426 - 32955477
Alignment:
| Q |
64 |
tttttctgcagtggtcatgggaaacaatagtcatggggatttccttcttggt |
115 |
Q |
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| T |
32955426 |
tttttctgcagtggtcatggcaaacaatagtgatgggaatttgcttcttggt |
32955477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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