View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11025_high_8 (Length: 384)
Name: NF11025_high_8
Description: NF11025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11025_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 6 - 365
Target Start/End: Complemental strand, 17473688 - 17473329
Alignment:
| Q |
6 |
agcagcacagacaataattctagaacaaccaagttttttcaagctaggtgcaccttcacctaaaggattaaccctagggttatcaattccaaaaggtgca |
105 |
Q |
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| T |
17473688 |
agcaacacaaacaataattctagaacaaccaagtttttccaagctaggtgcaccttcacctaaaggattaaccctagggttatcaattccaaaaggtgca |
17473589 |
T |
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| Q |
106 |
tttggatacaccaaatgccaaaccttatggaaaagattattttcaggctcaataataggttctgacccaatagggttagagctttgaaaataaggatgaa |
205 |
Q |
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| T |
17473588 |
tttgggtacaccaaatgccaaaccttatggaaaagattattttcaggctcaataataggttctgacccaatagggttagaactgtgaaaataaggatgaa |
17473489 |
T |
|
| Q |
206 |
ttaaaatagctcctaatattttaacatcataaggtaatttttcaattccagcttgaattgcaatgttatgtgcaatattagcaccagcactatcaccacc |
305 |
Q |
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| T |
17473488 |
ttaaaatagctcctaatattttaacatcataaggtaatttttcaattccagcttgaattgcaatgttatgtgcaatattagcaccagcactatcaccacc |
17473389 |
T |
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| Q |
306 |
aatgaaaaccttatcaaaatcaccatgttcaatcaaccatggttctgcattgttgatggt |
365 |
Q |
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| T |
17473388 |
aatgaaaaccttatcaaaatcaccatgttcaatcaaccatggttctgcattgttgatggt |
17473329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 6 - 363
Target Start/End: Original strand, 15233844 - 15234201
Alignment:
| Q |
6 |
agcagcacagacaataattctagaacaaccaagttttttcaagctaggtgcaccttcacctaaaggattaaccctagggttatcaattccaaaaggtgca |
105 |
Q |
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| T |
15233844 |
agcaacacaaacaataattcttgaacaaccaagtttttccaagctaggtgcaccttcacccaaaggattaaacctagggttatcaattccaaaaggtgca |
15233943 |
T |
|
| Q |
106 |
tttggatacaccaaatgccaaaccttatggaaaagattattttcaggctcaataataggttctgacccaatagggttagagctttgaaaataaggatgaa |
205 |
Q |
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| T |
15233944 |
tttgggtacgcaaaatgccaaaaagtatggataatattattttctggctcaataataggttctgacccaatagggttagcactgtaaaaataaggatgaa |
15234043 |
T |
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| Q |
206 |
ttaaaatagctcctaatattttaacatcataaggtaatttttcaattccagcttgaattgcaatgttatgtgcaatattagcaccagcactatcaccacc |
305 |
Q |
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| T |
15234044 |
ttataatagctcctaatattttaacatcacaaggtaaattttcaagtccagcttgaattgcaatgttatgagcaatattagcaccagcactatcaccacc |
15234143 |
T |
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| Q |
306 |
aatgaaaaccttatcaaaatcaccatgttcaatcaaccatggttctgcattgttgatg |
363 |
Q |
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| T |
15234144 |
aatgaaaagtttattaaaattaccatgttcgatcaaccatggttctggattgttgatg |
15234201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 326
Target Start/End: Complemental strand, 33902069 - 33902017
Alignment:
| Q |
274 |
tgtgcaatattagcaccagcactatcaccaccaatgaaaaccttatcaaaatc |
326 |
Q |
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|||||||||||||| |||||||||||||| || | |||||| || |||||||| |
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| T |
33902069 |
tgtgcaatattagccccagcactatcacctcctaagaaaactttctcaaaatc |
33902017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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