View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11025_low_12 (Length: 324)
Name: NF11025_low_12
Description: NF11025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11025_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 14734246 - 14734550
Alignment:
| Q |
1 |
gtaagaactcgtagtgactaatagtaagaatctactcattccaaaaggtggctggtgaactgagaagtttaagttggattcctccggggacacaaagaaa |
100 |
Q |
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| T |
14734246 |
gtaagaactcgtagtgactaatagtaagaatctactcattccaaaaggtggccggtgaactgagaagtttaagttggattcctccggggacacagagaaa |
14734345 |
T |
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| Q |
101 |
tgttaggatcaaattagaataccccaacattgttgtatatattgttggacagtatttcgtatgtggaaaattgaagaatttaagaatatccaaggattgg |
200 |
Q |
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| T |
14734346 |
tgttaggatcaaattagaataccccaacattgttgtatatattgttggacagtatttcgtatgtggaaaattgaagaatttaagaatatccagggattgg |
14734445 |
T |
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| Q |
201 |
tctgagaccttcgtgggagccgtagttgaagcaggaatgtgatacaaagtaaagttatactcctgaacgtatattcaaggttacatgataaaggggcaca |
300 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
14734446 |
tctgagaccttcgtgggagccgtagttgaagtaggaatgtgatacaaagtaaagttatactcctgaacccagattcaaggttacatgataaaggggcaca |
14734545 |
T |
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| Q |
301 |
agtaa |
305 |
Q |
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||||| |
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| T |
14734546 |
agtaa |
14734550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 120 - 293
Target Start/End: Original strand, 15594982 - 15595157
Alignment:
| Q |
120 |
taccccaacattgttgtatatattgttggacagtatttcgtatgtggaaaattgaagaatttaagaatatccaaggattggtctgagaccttcgtgggag |
219 |
Q |
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|||||||| | ||||| | | ||||||| | |||| ||||||||||||||| |||| ||| |||| ||||||||||||| ||||| ||| | | | || |
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| T |
15594982 |
taccccaatagtgttggacacattgttgaatagtacttcgtatgtggaaaagtgaaagattcaagagtatccaaggattgatctgacaccgtactagaag |
15595081 |
T |
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| Q |
220 |
ccgtagttgaa--gcaggaatgtgatacaaagtaaagttatactcctgaacgtatattcaaggttacatgataaag |
293 |
Q |
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| T |
15595082 |
ccgtagttgaaaagcaggagtgtgatatagagaaaagttatactcctgaacgcagattcaaggttacaggataaag |
15595157 |
T |
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