View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11025_low_13 (Length: 297)

Name: NF11025_low_13
Description: NF11025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11025_low_13
NF11025_low_13
[»] chr6 (5 HSPs)
chr6 (203-280)||(16488532-16488609)
chr6 (199-280)||(18367876-18367957)
chr6 (202-255)||(12696383-12696436)
chr6 (199-258)||(34595185-34595244)
chr6 (244-280)||(26562729-26562765)
[»] chr5 (6 HSPs)
chr5 (203-280)||(21814301-21814378)
chr5 (199-280)||(6401538-6401619)
chr5 (199-272)||(21542078-21542151)
chr5 (240-280)||(6418072-6418112)
chr5 (207-258)||(30098995-30099046)
chr5 (239-280)||(11685979-11686019)
[»] chr4 (6 HSPs)
chr4 (36-143)||(32835418-32835524)
chr4 (199-280)||(5414110-5414191)
chr4 (214-280)||(46083944-46084010)
chr4 (199-280)||(30982816-30982897)
chr4 (232-280)||(19500829-19500877)
chr4 (244-280)||(40742631-40742667)
[»] scaffold0623 (1 HSPs)
scaffold0623 (199-280)||(5934-6015)
[»] chr8 (4 HSPs)
chr8 (199-280)||(26902113-26902194)
chr8 (199-265)||(34450970-34451036)
chr8 (221-280)||(15816089-15816148)
chr8 (199-258)||(43737760-43737819)
[»] chr2 (5 HSPs)
chr2 (1-50)||(19350686-19350735)
chr2 (199-258)||(24009346-24009405)
chr2 (214-280)||(34784935-34785001)
chr2 (199-280)||(35056908-35056989)
chr2 (215-280)||(36096329-36096394)
[»] chr1 (4 HSPs)
chr1 (199-280)||(25934656-25934737)
chr1 (240-280)||(44482270-44482310)
chr1 (199-251)||(10577684-10577736)
chr1 (240-280)||(34315752-34315792)
[»] scaffold0306 (1 HSPs)
scaffold0306 (199-258)||(13457-13516)
[»] scaffold0152 (1 HSPs)
scaffold0152 (199-258)||(21811-21870)
[»] chr7 (4 HSPs)
chr7 (199-272)||(25822703-25822776)
chr7 (229-280)||(4794929-4794980)
chr7 (221-272)||(24339690-24339741)
chr7 (239-280)||(6630890-6630931)
[»] scaffold0279 (1 HSPs)
scaffold0279 (220-280)||(17839-17899)
[»] chr3 (2 HSPs)
chr3 (199-258)||(13845474-13845533)
chr3 (240-280)||(16192729-16192769)
[»] scaffold0376 (1 HSPs)
scaffold0376 (239-280)||(6352-6393)


Alignment Details
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 203 - 280
Target Start/End: Original strand, 16488532 - 16488609
Alignment:
Q  203 acattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataatt 280  Q
    ||||||||| ||||||| ||||||||||| ||||  |||||||||||||||||||| |||||| ||||||||||||||    
T  16488532 acattccttggataaggcgtgtccccgtgccagacacgtgtcgtgtccgacaccgacacgacaccgacacatataatt 16488609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 199 - 280
Target Start/End: Complemental strand, 18367957 - 18367876
Alignment:
Q  199 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataatt 280  Q
    ||||||| ||||| ||||||| ||||||||||||||||   |||||||||| |||||||| |||||| ||||||||||||||    
T  18367957 acggacactccttggataaggcgtgtccccgtgtcagacatgtgtcgtgtctgacaccgacacgacaccgacacatataatt 18367876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 255
Target Start/End: Complemental strand, 12696436 - 12696383
Alignment:
Q  202 gacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacac 255  Q
    |||| ||||| ||||||||||||||| ||||||||  |||||||||||||||||    
T  12696436 gacactccttggataaggtgtgtcccggtgtcagacacgtgtcgtgtccgacac 12696383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 34595244 - 34595185
Alignment:
Q  199 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccga 258  Q
    ||||||| ||||  ||| ||||||||||| ||||||||  ||||||||||||||||||||    
T  34595244 acggacactcctcggattaggtgtgtcccggtgtcagacacgtgtcgtgtccgacaccga 34595185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 280
Target Start/End: Complemental strand, 26562765 - 26562729
Alignment:
Q  244 cgtgtccgacaccgatacgacatcgacacatataatt 280  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  26562765 cgtgttcgacaccgacacgacatcgacacatataatt 26562729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 203 - 280
Target Start/End: Complemental strand, 21814378 - 21814301
Alignment:
Q  203 acattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataatt 280  Q
    ||||||||| ||||||| ||||||||||| ||||  |||||||||||||||||||| |||||| ||||||||||||||    
T  21814378 acattccttggataaggcgtgtccccgtgccagacacgtgtcgtgtccgacaccgacacgacaccgacacatataatt 21814301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 199 - 280
Target Start/End: Complemental strand, 6401619 - 6401538
Alignment:
Q  199 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataatt 280  Q
    ||||||| ||||| ||||||| || |||||||||||||  ||||||||||||||||| || |||||| ||||||||||||||    
T  6401619 acggacactccttggataaggcgtatccccgtgtcagacacgtgtcgtgtccgacactgacacgacaccgacacatataatt 6401538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 272
Target Start/End: Complemental strand, 21542151 - 21542078
Alignment:
Q  199 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacac 272  Q
    ||||||||||||| |||  || ||||||| ||||| ||  |||||||||||||||||||| |||||| ||||||    
T  21542151 acggacattccttggattcggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacgacaccgacac 21542078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 6418112 - 6418072
Alignment:
Q  240 gtgtcgtgtccgacaccgatacgacatcgacacatataatt 280  Q
    ||||||||| ||||||||||||||| |||||||||||||||    
T  6418112 gtgtcgtgttcgacaccgatacgacgtcgacacatataatt 6418072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 258
Target Start/End: Original strand, 30098995 - 30099046
Alignment:
Q  207 tccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccga 258  Q
    ||||| ||||||| ||||||||||||||||  |||||||| |||||||||||    
T  30098995 tccttggataaggcgtgtccccgtgtcagacacgtgtcgtatccgacaccga 30099046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 11686019 - 11685979
Alignment:
Q  239 cgtgtcgtgtccgacaccgatacgacatcgacacatataatt 280  Q
    |||||||||||||||||||| |||||| ||||||||||||||    
T  11686019 cgtgtcgtgtccgacaccga-acgacaccgacacatataatt 11685979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 143
Target Start/End: Original strand, 32835418 - 32835524
Alignment:
Q  36 tattttgcatgattttcaaatattttgtgttgttaatttaacttttagctaattatttagttacataaactaattgtttagctgaattgctttgttttat 135  Q
    ||||||| || ||||| |||||| ||| |||||||||||||||||||||||||||||||  || |  ||||| |||| ||||||||||||||| |||| |    
T  32835418 tattttgaataattttaaaatatattgcgttgttaatttaacttttagctaattattta-ataaagtaactatttgtctagctgaattgctttctttttt 32835516  T
Q  136 ggcaaaat 143  Q
    ||||||||    
T  32835517 ggcaaaat 32835524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 199 - 280
Target Start/End: Original strand, 5414110 - 5414191
Alignment:
Q  199 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataatt 280  Q
    ||||||| ||||| ||||||||||||||| ||||||||  ||||||||||||||||| || |||||| ||| ||||||||||    
T  5414110 acggacactccttggataaggtgtgtccctgtgtcagacacgtgtcgtgtccgacactgacacgacaccgatacatataatt 5414191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 280
Target Start/End: Original strand, 46083944 - 46084010
Alignment:
Q  214 ataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataatt 280  Q
    |||||| ||||||||| ||||||  |||||||||||||| || || |||||| ||||||||||||||    
T  46083944 ataaggcgtgtccccgcgtcagacacgtgtcgtgtccgatactgacacgacaccgacacatataatt 46084010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 280
Target Start/End: Original strand, 30982816 - 30982897
Alignment:
Q  199 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataatt 280  Q
    ||||||| || || ||| ||| ||||||| ||||| ||  ||||||||||| |||||||| |||||| |||||| |||||||    
T  30982816 acggacactctttggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacacgacaccgacacttataatt 30982897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 280
Target Start/End: Original strand, 19500829 - 19500877
Alignment:
Q  232 tcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataatt 280  Q
    ||||| ||||||||||||||||||||| |||||| |  |||||||||||    
T  19500829 tcagaggcgtgtcgtgtccgacaccgacacgacaccatcacatataatt 19500877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 280
Target Start/End: Complemental strand, 40742667 - 40742631
Alignment:
Q  244 cgtgtccgacaccgatacgacatcgacacatataatt 280  Q
    |||||| |||||||| |||||||||||||||||||||    
T  40742667 cgtgtctgacaccgacacgacatcgacacatataatt 40742631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0623 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 199 - 280
Target Start/End: Original strand, 5934 - 6015
Alignment:
Q  199 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataatt 280  Q
    ||||||| ||||| ||||||| ||||| | ||||||||  |||||||||| |||||||||||||||| ||||||||||||||    
T  5934 acggacactccttggataaggcgtgtctctgtgtcagacacgtgtcgtgttcgacaccgatacgacaccgacacatataatt 6015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 199 - 280
Target Start/End: Original strand, 26902113 - 26902194
Alignment:
Q  199 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataatt 280  Q
    ||||||| |||| |||||||| ||||||||||| ||||  |||||||||||||||||  |||||||| ||||||||||||||    
T  26902113 acggacactcctcagataaggcgtgtccccgtgccagacacgtgtcgtgtccgacactcatacgacaccgacacatataatt 26902194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 265
Target Start/End: Original strand, 34450970 - 34451036
Alignment:
Q  199 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgaca 265  Q
    ||||||| ||||| ||||||| ||||||||||||||||  |||||||||||||||||||| ||||||    
T  34450970 acggacactccttggataaggcgtgtccccgtgtcagacacgtgtcgtgtccgacaccgacacgaca 34451036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 280
Target Start/End: Original strand, 15816089 - 15816148
Alignment:
Q  221 gtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataatt 280  Q
    ||||||| ||||| ||| |||||||||||||||||| | |||||| |||||| |||||||    
T  15816089 gtgtcccggtgtcggattcgtgtcgtgtccgacaccaacacgacaccgacacttataatt 15816148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 43737760 - 43737819
Alignment:
Q  199 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccga 258  Q
    ||||||| ||||| ||||||| || |||||||||||||  | ||||||||||||||||||    
T  43737760 acggacactccttggataaggcgtatccccgtgtcagacacctgtcgtgtccgacaccga 43737819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 19350735 - 19350686
Alignment:
Q  1 attgaacaagtttcaaattggtgaatatatttcattattttgcatgattt 50  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  19350735 attgaacaagtttcaaattggtgaatatatttcattattctgcatgattt 19350686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 24009405 - 24009346
Alignment:
Q  199 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccga 258  Q
    ||||||| ||||| ||||||| ||||||||||||||||  ||||||||||||||||||||    
T  24009405 acggacactccttggataaggcgtgtccccgtgtcagacacgtgtcgtgtccgacaccga 24009346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 214 - 280
Target Start/End: Original strand, 34784935 - 34785001
Alignment:
Q  214 ataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataatt 280  Q
    |||||| ||||||||||||||||   ||||||||||||| ||||| |||||| ||||||||||||||    
T  34784935 ataaggcgtgtccccgtgtcagacaggtgtcgtgtccgataccgacacgacaccgacacatataatt 34785001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 280
Target Start/End: Complemental strand, 35056989 - 35056908
Alignment:
Q  199 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataatt 280  Q
    ||||||| |||| |||| ||| ||||  ||||||| ||  |||||||||||||||||||| |||||| ||||||||||||||    
T  35056989 acggacactcctcagattaggcgtgtttccgtgtcggacacgtgtcgtgtccgacaccgacacgacaccgacacatataatt 35056908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 280
Target Start/End: Original strand, 36096329 - 36096394
Alignment:
Q  215 taaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataatt 280  Q
    ||||| ||||||||||||||||  |||||||||||||||| ||| |||||| ||||| ||||||||    
T  36096329 taaggcgtgtccccgtgtcagacacgtgtcgtgtccgacatcgacacgacaccgacaaatataatt 36096394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 199 - 280
Target Start/End: Complemental strand, 25934737 - 25934656
Alignment:
Q  199 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataatt 280  Q
    ||||||| ||||| ||||||| || |||||||||||||  |||||||||||||||||||| |||| | ||||||||||||||    
T  25934737 acggacactccttggataaggcgtatccccgtgtcagacacgtgtcgtgtccgacaccgacacgataccgacacatataatt 25934656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 44482310 - 44482270
Alignment:
Q  240 gtgtcgtgtccgacaccgatacgacatcgacacatataatt 280  Q
    ||||||||||||||||||| |||||| ||||||||||||||    
T  44482310 gtgtcgtgtccgacaccgacacgacaccgacacatataatt 44482270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 10577684 - 10577736
Alignment:
Q  199 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccg 251  Q
    ||||||| ||||| ||||||| ||||||||||||||||  || ||||||||||    
T  10577684 acggacactccttggataaggcgtgtccccgtgtcagacacgcgtcgtgtccg 10577736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 34315792 - 34315752
Alignment:
Q  240 gtgtcgtgtccgacaccgatacgacatcgacacatataatt 280  Q
    ||||||||| |||||||||||||| | ||||||||||||||    
T  34315792 gtgtcgtgttcgacaccgatacgataccgacacatataatt 34315752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 13516 - 13457
Alignment:
Q  199 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccga 258  Q
    ||||||| ||||| ||| ||||||||||  |||||||| |||||||||||||||||||||    
T  13516 acggacactccttggattaggtgtgtcctagtgtcagacgcgtgtcgtgtccgacaccga 13457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 21811 - 21870
Alignment:
Q  199 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccga 258  Q
    ||||||| ||||| ||| ||||||||||  |||||||| |||||||||||||||||||||    
T  21811 acggacactccttggattaggtgtgtcctagtgtcagacgcgtgtcgtgtccgacaccga 21870  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 272
Target Start/End: Complemental strand, 25822776 - 25822703
Alignment:
Q  199 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacac 272  Q
    ||||||| ||||||||| |||  ||||||  |||||||  |||||||||||||| |||||||||||| ||||||    
T  25822776 acggacactccttagattaggcatgtcccgatgtcagacacgtgtcgtgtccgataccgatacgacaccgacac 25822703  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 280
Target Start/End: Complemental strand, 4794980 - 4794929
Alignment:
Q  229 gtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataatt 280  Q
    ||||||||| ||||||||||||||||||||||||  | |||||| |||||||    
T  4794980 gtgtcagatacgtgtcgtgtccgacaccgatacggtaccgacacttataatt 4794929  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 272
Target Start/End: Complemental strand, 24339741 - 24339690
Alignment:
Q  221 gtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacac 272  Q
    ||||||| ||||| ||| |||||||||||||||||||| |||||| ||||||    
T  24339741 gtgtcccggtgtcggatacgtgtcgtgtccgacaccgacacgacaccgacac 24339690  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 6630890 - 6630931
Alignment:
Q  239 cgtgtcgtgtccgacaccgatacgacatcgacacatataatt 280  Q
    ||||| |||||||||||| | |||||||||||||||||||||    
T  6630890 cgtgttgtgtccgacaccaacacgacatcgacacatataatt 6630931  T

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Target: scaffold0279 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 280
Target Start/End: Original strand, 17839 - 17899
Alignment:
Q  220 tgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataatt 280  Q
    |||||||| ||||| ||  |||||||||||| |||||||||||||| || |||||||||||    
T  17839 tgtgtcccagtgtcggacacgtgtcgtgtccaacaccgatacgacaccgtcacatataatt 17899  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 13845474 - 13845533
Alignment:
Q  199 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccga 258  Q
    ||||||| ||||| ||||||| ||||| ||||||||||  ||| ||||||||||||||||    
T  13845474 acggacactccttggataaggcgtgtctccgtgtcagacacgtctcgtgtccgacaccga 13845533  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 16192729 - 16192769
Alignment:
Q  240 gtgtcgtgtccgacaccgatacgacatcgacacatataatt 280  Q
    |||||||||| |||||||| |||||||| ||||||||||||    
T  16192729 gtgtcgtgtctgacaccgacacgacatcaacacatataatt 16192769  T

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Target: scaffold0376 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 6393 - 6352
Alignment:
Q  239 cgtgtcgtgtccgacaccgatacgacatcgacacatataatt 280  Q
    ||||||||| || |||||||||||||| ||||||||||||||    
T  6393 cgtgtcgtgccccacaccgatacgacaccgacacatataatt 6352  T

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