View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11025_low_14 (Length: 297)
Name: NF11025_low_14
Description: NF11025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11025_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 15 - 284
Target Start/End: Complemental strand, 29015847 - 29015578
Alignment:
| Q |
15 |
gatgagatttaaaggcatttttccatcagattttaaagcaatcatgattctccaataaagatcaattttcaattcagctaaatcttcaccccaccatctt |
114 |
Q |
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| T |
29015847 |
gatgagatttaaaggcatttttccatcagattttaaagcaatcatgattctccaataaagatcaattttcaattcagctaaatcttcaccccaccatcct |
29015748 |
T |
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| Q |
115 |
tttcttactgatttatctctcaaactttctgttccactacaagatatatcatcttcatttctaaccctcttcaagaccttcgagcaaattgcttcgatac |
214 |
Q |
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| T |
29015747 |
tttcttactgatttatctctcaaactttctgttccactacaagatatatcatcttcatttctaaccctctttaagaccttcgagcaaattgcttcgatgc |
29015648 |
T |
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| Q |
215 |
atctatttgtaattgacaattcctctgaccataaagacaatgcttttgtggtttgtagtgtcacaactga |
284 |
Q |
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| T |
29015647 |
atctatttgtaattgacaattcctctgaccataaagacaatgcttttgtggtttgtagtgtcacaactga |
29015578 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 167
Target Start/End: Complemental strand, 14129317 - 14129241
Alignment:
| Q |
91 |
gctaaatcttcaccccaccatctttttcttactgatttatctctcaaactttctgttccactacaagatatatcatc |
167 |
Q |
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| T |
14129317 |
gctaaatcttcagcccaccatcctttacttcctgatttgattctcaaactttctgtatcattgcaagatatgtcatc |
14129241 |
T |
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