View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11025_low_15 (Length: 293)
Name: NF11025_low_15
Description: NF11025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11025_low_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 95 - 282
Target Start/End: Original strand, 32156977 - 32157164
Alignment:
| Q |
95 |
gaattattaggaattacaagtaagtcatcttgaatctgtgtcctctttatatcaattatggaagctccatccaatgcttgagaaatgatcgaagtgtcgt |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
32156977 |
gaattattaggaattacaagtaagtcatcttgaatttgtgtcctctttatatcaattatggaagctccatccaatgcttgagaaatgagccaagtgtcgt |
32157076 |
T |
|
| Q |
195 |
cgaatttgaactctgtgatagggtcagcaggaaaatccaattcaatataagatacatccttagctttaccattttgcaaattcttctt |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
32157077 |
cgaatttgaactctgtgatagggtcagcaggaaaatccaattcaatataagatacatccttggctttaccattttgcaaattcttctt |
32157164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 32156860 - 32156930
Alignment:
| Q |
17 |
cacatattgcaaaaaatattcaatctgttttttcaaatacattttcaaaaacttcaaataacatcttctct |
87 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32156860 |
cacatattgcaaaaaatattcaatctgttttttcaaatacattttcaaaaacttcaaataacatcttctct |
32156930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 100 - 243
Target Start/End: Complemental strand, 27359498 - 27359355
Alignment:
| Q |
100 |
attaggaattacaagtaagtcatcttgaatctgtgtcctctttatatcaattatggaagctccatccaatgcttgagaaatgatcgaagtgtcgtcgaat |
199 |
Q |
| |
|
||||||||||||||||| || |||||||||| |||||||||||||||||||||| ||||| ||| ||||||||| |||||||| ||||| || || || |
|
|
| T |
27359498 |
attaggaattacaagtatgttatcttgaatcagtgtcctctttatatcaattatagaagcaccacccaatgcttcagaaatgagtgaagtatcatcaaaa |
27359399 |
T |
|
| Q |
200 |
ttgaactctgtgatagggtcagcaggaaaatccaattcaatata |
243 |
Q |
| |
|
|||| || || |||||||| | |||||||||||||| ||||| |
|
|
| T |
27359398 |
ttgagttcagtaatagggtccactggaaaatccaattctatata |
27359355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 277
Target Start/End: Original strand, 32167637 - 32167781
Alignment:
| Q |
133 |
tgtcctctttatatcaattatggaagctccatccaatgcttgagaaatgatcgaagtgtcgtcgaatttgaactctgtgatagggtcagcaggaaaatcc |
232 |
Q |
| |
|
|||||||||||||||||| |||||||| |||| ||||||| |||||||| |||||||| | | ||||| |||| ||||||||||||||||||||| |
|
|
| T |
32167637 |
tgtcctctttatatcaataatggaagcaccattcaatgctccagaaatgagtgaagtgtcattagaattgaattctgcaatagggtcagcaggaaaatcc |
32167736 |
T |
|
| Q |
233 |
aattcaatataagatacatccttagctttaccattttgcaaattc |
277 |
Q |
| |
|
|||||||||||| || || || ||||| ||| || ||||||||| |
|
|
| T |
32167737 |
aattcaatataaaatccaaccggagcttcaccgttctgcaaattc |
32167781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 27348471 - 27348539
Alignment:
| Q |
103 |
aggaattacaagtaagtcatcttgaatctgtgtcctctttatatcaattatggaagctccatccaatgc |
171 |
Q |
| |
|
||||||||||||||| |||||| || | ||||||||| |||||||| |||||||| |||| |||||| |
|
|
| T |
27348471 |
aggaattacaagtaaatcatctgcaaattctgtcctcttcatatcaataatggaagcaccattcaatgc |
27348539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 260
Target Start/End: Complemental strand, 44291441 - 44291283
Alignment:
| Q |
102 |
taggaattacaagtaagtcatcttgaatctgtgtcctctttatatcaattatggaagctccatccaatgcttgagaaatgatcgaagtgtcgtcgaattt |
201 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||| | ||||| |||||||| || |||| || |||||| | ||| | || || ||||| |
|
|
| T |
44291441 |
taggaattacaatcaagtcatcttgaatctctgtcctcttcacatcaacaatggaagcctcactcaatactccagaaataagtgaaatatcatcaaattt |
44291342 |
T |
|
| Q |
202 |
gaactctgtgatagggtcagcaggaaaatccaattcaatataagatacatccttagctt |
260 |
Q |
| |
|
| |||| || ||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
44291341 |
tagttctgaaattgggtcagcaggaaaatccaattcaacataaaatacatccttagctt |
44291283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University