View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11025_low_16 (Length: 286)
Name: NF11025_low_16
Description: NF11025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11025_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 153 - 262
Target Start/End: Complemental strand, 7035100 - 7034991
Alignment:
| Q |
153 |
gactttaaattatagctgcattcaacaagctagatatcagattaagccctgttgatgacttgactaatgagtaccgacttagtccagtcaatattacagt |
252 |
Q |
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| T |
7035100 |
gactttaaattatagctgcattcaacaagctagatatcagattaagccctgttgatgacttgactaatgagtaccgacttagtccagtcaatattacagt |
7035001 |
T |
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| Q |
253 |
tatgttgcta |
262 |
Q |
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| T |
7035000 |
tatgttgcta |
7034991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 7035245 - 7035151
Alignment:
| Q |
1 |
atctgaggaacagggctggaactagtaggagaaaatatcagcataaagagagtgagataaacaaataaacttatgctactactggatatctgcat |
95 |
Q |
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| T |
7035245 |
atctgaggaacagggctggaactagtaggagaaaatatcagcataaagagagtgagataaacaaataaacttatgctactacaggatatctgcat |
7035151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 7028456 - 7028415
Alignment:
| Q |
46 |
aagagagtgagataaacaaataaacttatgctactactggat |
87 |
Q |
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| T |
7028456 |
aagagagtgagataaagaaacaaacttatgctactactggat |
7028415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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