View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11025_low_2 (Length: 530)
Name: NF11025_low_2
Description: NF11025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11025_low_2 |
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| [»] scaffold0032 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 517
Target Start/End: Original strand, 14660947 - 14661468
Alignment:
| Q |
1 |
taaccaatttaatataacatacacaaaaacattctcaatttaatataacctgttgaagcaaataaaagataccaaattgtagcaaatcatttgataggta |
100 |
Q |
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| T |
14660947 |
taaccaatttaatataacatacacaaaaacattctcaatttaatataacctgttgaagcaaataaaagataccacattgtagcaaatcatttgatagcta |
14661046 |
T |
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| Q |
101 |
atcaaatggcttaccaaattggtaccaagatttagaaacagcagatgcacgaataaggtcgcatgggtcattcaaatttaaatggttaaaaacatcaatg |
200 |
Q |
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| T |
14661047 |
atcaaatggcttaccaaattggtaccaagatttagaaacagcagatgcacgaataaggtcgcatgggtcattcaaattcaaatggttaaaaacatcaatg |
14661146 |
T |
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| Q |
201 |
gacatgtcacgtcctaggcattgtatcaaatcttgtgtgtttttcccttctgacatttatccaagaatcacgagttcgatatcaaacaaggttgtttatc |
300 |
Q |
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| T |
14661147 |
gacatgtcacgtcctaggcattgtatgaaatcttgtgtgtttttcccttctgacatttatccaagaatcaagatttcggtatcaaacaaagttgtttatc |
14661246 |
T |
|
| Q |
301 |
aattactgtcaaacagatttgcgcgacctaatgagaaaacatttaaatacaaaaatcgatccgtggaagcttttccagaagaaataaagatgctgtcata |
400 |
Q |
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| T |
14661247 |
aattactgtcaaacagatttgcgcgacctaatgagaaaacatttaaatacaaaaatcgatccgtggaagctttttcagaagaaataaagatgctatcata |
14661346 |
T |
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| Q |
401 |
gaaatggctatatccaatgggagaattaatctcccattgagtctggtgtttctggggtttcgttgctgtctttgta-----atttttaatttgctcgtat |
495 |
Q |
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| T |
14661347 |
gaaatggctatatccaatgggagaattaatctcccattgagtctggtgtttctggggtttcgttgctgtctttgtgctgttatttttaatttgctcgtat |
14661446 |
T |
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| Q |
496 |
atttggtgcggagtgttttgtg |
517 |
Q |
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| T |
14661447 |
atttggtgcggagtgttttgtg |
14661468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 100 - 176
Target Start/End: Complemental strand, 41846 - 41770
Alignment:
| Q |
100 |
aatcaaatggcttaccaaattggtaccaagatttagaaacagcagatgcacgaataaggtcgcatgggtcattcaaa |
176 |
Q |
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| T |
41846 |
aatcaaatggcttaccaaatcggtaccaagatttagaaacagcagatacacgaacgaggtcacatcggtcatccaaa |
41770 |
T |
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