View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11025_low_20 (Length: 249)
Name: NF11025_low_20
Description: NF11025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11025_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 34624627 - 34624865
Alignment:
| Q |
1 |
gatatgtggtttgaaggattgattatatcaaatgaatgatattctcatctacagtgatacaaaaagggcagtctgtgatgagtatcattttttgtcaatc |
100 |
Q |
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| T |
34624627 |
gatatgtggtttgaaggattgattataccaaatgaatggtattctcatctacggtgatacaaaaagggtagtctgtgatgagtatcattttttgtcaatc |
34624726 |
T |
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| Q |
101 |
gactcatatgggcgtgttaggttcacaaagatgaaacttcaaaacaataacgatatgaaaactatgttctatacatttgcttagtatagtttcaagggac |
200 |
Q |
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| T |
34624727 |
gactcatatgggcgtgttaggttcacaaagatgaaacttcaaaacaataacgatatgaaaactatgttctatacatttgcttagtatagtttcaagggac |
34624826 |
T |
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| Q |
201 |
cgatcaatttagaaaccatcttggtgagatatgttcatg |
239 |
Q |
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| T |
34624827 |
cgatcaatttagaaaccatcttggtgagatatgttcatg |
34624865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 34554105 - 34554045
Alignment:
| Q |
131 |
atgaaacttcaaaacaataacgatatgaaaactatgttctatacatttgcttagtatagtt |
191 |
Q |
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||||||||||||||||| |||||| ||||||||||||| | || ||||| | ||||||||| |
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| T |
34554105 |
atgaaacttcaaaacaacaacgatgtgaaaactatgttatctatatttgttgagtatagtt |
34554045 |
T |
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