View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11025_low_24 (Length: 239)
Name: NF11025_low_24
Description: NF11025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11025_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 34624588 - 34624366
Alignment:
| Q |
1 |
attattttgtaaactgcatttagattagagttcatttaatgtgttttctgttgtgaatgaaaatgaatcaaacacaccaatttatacaagtgtttgtgca |
100 |
Q |
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| T |
34624588 |
attattttgtaaactgcatttagattagagttcatttaatgtgttttctgttgtgaatgaaaatgaatcaaacacaccaatttatacaagtgtttgtgca |
34624489 |
T |
|
| Q |
101 |
ttataggcaacataaattatcggtccattgtaaatcatacaaactatcagcgcattgtagaccacatatcaacaattattgtgtttcacatgttcggatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34624488 |
ttataggcaacataaattatcggtccattgtaaatcatacaaactattagcgcgttgtagaccacatatcaacaattattgtgtttcacatgttcggatt |
34624389 |
T |
|
| Q |
201 |
ctataactcagacgtgtaattta |
223 |
Q |
| |
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||||||||||| |||||||||| |
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| T |
34624388 |
ctataactcagtagtgtaattta |
34624366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 100
Target Start/End: Original strand, 43824602 - 43824661
Alignment:
| Q |
41 |
gtgttttctgttgtgaatgaaaatgaatcaaacacaccaatttatacaagtgtttgtgca |
100 |
Q |
| |
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| T |
43824602 |
gtgttttatgttgtgaataaaaatgaatcaaacacgttaatttatacaagtttttgtgca |
43824661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 102
Target Start/End: Original strand, 34346680 - 34346727
Alignment:
| Q |
55 |
gaatgaaaatgaatcaaacacaccaatttatacaagtgtttgtgcatt |
102 |
Q |
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||||||||||||||||| |||| |||||||||||| | |||||||||| |
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| T |
34346680 |
gaatgaaaatgaatcaagcacatcaatttatacaaatttttgtgcatt |
34346727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 17232232 - 17232281
Alignment:
| Q |
51 |
ttgtgaatgaaaatgaatcaaacacaccaatttatacaagtgtttgtgca |
100 |
Q |
| |
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|||||||||| ||||||||||||| |||||||||||||||| || ||||| |
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|
| T |
17232232 |
ttgtgaatgataatgaatcaaacaaaccaatttatacaagttttagtgca |
17232281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 34341227 - 34341265
Alignment:
| Q |
61 |
aaatgaatcaaacacaccaatttatacaagtgtttgtgc |
99 |
Q |
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||||||| ||||||||||||||||||||||| ||||||| |
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|
| T |
34341227 |
aaatgaaccaaacacaccaatttatacaagtttttgtgc |
34341265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 91
Target Start/End: Original strand, 26237497 - 26237533
Alignment:
| Q |
55 |
gaatgaaaatgaatcaaacacaccaatttatacaagt |
91 |
Q |
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||||||||||||||||||||| |||||| |||||||| |
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|
| T |
26237497 |
gaatgaaaatgaatcaaacacgccaattaatacaagt |
26237533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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