View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11025_low_26 (Length: 225)

Name: NF11025_low_26
Description: NF11025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11025_low_26
NF11025_low_26
[»] chr2 (10 HSPs)
chr2 (58-225)||(39503668-39503835)
chr2 (89-225)||(39100024-39100160)
chr2 (1-59)||(39503977-39504035)
chr2 (74-218)||(39126913-39127055)
chr2 (11-59)||(39604515-39604563)
chr2 (154-225)||(39126048-39126119)
chr2 (1-59)||(39099776-39099834)
chr2 (1-48)||(2362868-2362915)
chr2 (127-217)||(39452050-39452140)
chr2 (156-218)||(39139802-39139866)


Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 58 - 225
Target Start/End: Complemental strand, 39503835 - 39503668
Alignment:
Q  58 ttaagatattttctggtggtaggaaattgatctgatatataattggcttgatgcactagatgcaaaggtttcattttatttctgccaactgttctgtctc 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39503835 ttaagatattttctggtggtaggaaattgatctgatatataattggcttgatgcactagatgcaaaggtttcattttatttctgccaactgttctgtctc 39503736  T
Q  158 atttgttaagtgaaatttggtatcttggttaatgcttggaaaatgaaatagactttaaattagtatat 225  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39503735 atttgttaagagaaatttggtatcttggctaatgcttggaaaatgaaatagactttaaattagtatat 39503668  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 89 - 225
Target Start/End: Original strand, 39100024 - 39100160
Alignment:
Q  89 ctgatatataattggcttgatgcactagatgcaaaggtttcattttatttctgccaactgttctgtctcatttgttaagtgaaatttggtatcttggtta 188  Q
    ||||||| |||||||||| || |||| ||||| ||||||| ||||| ||||| ||||| |||||||||||||||||||| ||||||||||||||||  ||    
T  39100024 ctgatatgtaattggcttcatacacttgatgctaaggttttattttgtttcttccaacagttctgtctcatttgttaagagaaatttggtatcttgacta 39100123  T
Q  189 atgcttggaaaatgaaatagactttaaattagtatat 225  Q
     | || |||||||||||||||||| || ||| |||||    
T  39100124 gttctcggaaaatgaaatagacttcaagttaatatat 39100160  T

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Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 39504035 - 39503977
Alignment:
Q  1 gctttttggttttgctgctcagcacgagatagctgtagagctgtttggaactcttggtt 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39504035 gctttttggttttgctgctcagcacgagatagctgtagagctgtttggaactcttggtt 39503977  T

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Target: chr2; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 74 - 218
Target Start/End: Original strand, 39126913 - 39127055
Alignment:
Q  74 tggtaggaaattgatctgatatataattggcttgatgcactagatgcaaaggtttcattttatttctgccaactgttctgtctcatttgttaagtgaaat 173  Q
    |||||| ||||||| ||||||| ||||| || | || || | |||||||||||||||||   ||||| |||||  ||||||||||||||||||| |||||    
T  39126913 tggtagaaaattga-ctgatatgtaatttgcatcatacatttgatgcaaaggtttcattgcgtttcttccaacatttctgtctcatttgttaagagaaat 39127011  T
Q  174 ttggtatcttggttaatgcttggaaaatgaaatagactttaaatt 218  Q
    || |||| |||| || ||||||||||||| ||||||||| |||||    
T  39127012 tttgtattttggctagtgcttggaaaatg-aatagacttgaaatt 39127055  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 39604515 - 39604563
Alignment:
Q  11 tttgctgctcagcacgagatagctgtagagctgtttggaactcttggtt 59  Q
    |||||||||||| || |||||||||||||||||||||||||||| ||||    
T  39604515 tttgctgctcaggacaagatagctgtagagctgtttggaactctgggtt 39604563  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 225
Target Start/End: Original strand, 39126048 - 39126119
Alignment:
Q  154 tctcatttgttaagtgaaatttggtatcttggttaatgcttggaaaatgaaatagactttaaattagtatat 225  Q
    |||||||||||||| |||| |||  |||||||  |||||||||||||||||||| |||| ||||| ||||||    
T  39126048 tctcatttgttaagagaaaattgaaatcttggccaatgcttggaaaatgaaataaacttcaaatttgtatat 39126119  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 39099776 - 39099834
Alignment:
Q  1 gctttttggttttgctgctcagcacgagatagctgtagagctgtttggaactcttggtt 59  Q
    ||||||||| ||||||||||||||| ||||||||||| |||| ||||||| ||| ||||    
T  39099776 gctttttgggtttgctgctcagcacaagatagctgtaaagctctttggaattctgggtt 39099834  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 2362868 - 2362915
Alignment:
Q  1 gctttttggttttgctgctcagcacgagatagctgtagagctgtttgg 48  Q
    ||||||||| ||||||||||| ||| ||||| ||||||||||||||||    
T  2362868 gctttttgggtttgctgctcaacacaagatatctgtagagctgtttgg 2362915  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 217
Target Start/End: Original strand, 39452050 - 39452140
Alignment:
Q  127 ttcattttatttctgccaactgttctgtctcatttgttaagtgaaatttggtatcttggt--taatgcttggaaaatgaaatagactttaaat 217  Q
    |||||||| ||||  |||||||||  ||||||||||||||| |||| |||  ||||| ||  |||||||||||||||||||| ||||| ||||    
T  39452050 ttcattttgtttcccccaactgtt--gtctcatttgttaagggaaaattgacatcttagtgttaatgcttggaaaatgaaattgacttgaaat 39452140  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 39139802 - 39139866
Alignment:
Q  156 tcatttgttaagtgaaatttggtatcttggt--taatgcttggaaaatgaaatagactttaaatt 218  Q
    |||||||||||| |||| |||  ||||||||  |||||| ||||||||||||||||||| |||||    
T  39139802 tcatttgttaagagaaaattgacatcttggtgttaatgcgtggaaaatgaaatagacttcaaatt 39139866  T

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