View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11025_low_27 (Length: 219)
Name: NF11025_low_27
Description: NF11025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11025_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-100; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 10 - 201
Target Start/End: Complemental strand, 30395534 - 30395343
Alignment:
| Q |
10 |
aggagcagagaccttacaggatggttataattggagaaaatatggccaaaaacaagtaaaaggcagtgaatatccgagaagctactacaaatgtaatcag |
109 |
Q |
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| T |
30395534 |
aggagcaaagaccttacaggatggttataattggagaaaatatggccaaaaacaagtaaaaggcagtgaatatccgagaagctactacaaatgtaatcag |
30395435 |
T |
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| Q |
110 |
tctaattgtcaggtcaggaaaaaggtggaaagatcacatgatggcaacataagagaaattatttacagtggtaatcacaaccatgcaaaacc |
201 |
Q |
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| T |
30395434 |
tctaattgtcaggtcaggaaaaaggtggaaagatcacatgatggcaacataagagaaattatttacagtggtaatcataaccatgcaaaacc |
30395343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 10 - 201
Target Start/End: Complemental strand, 30409195 - 30409004
Alignment:
| Q |
10 |
aggagcagagaccttacaggatggttataattggagaaaatatggccaaaaacaagtaaaaggcagtgaatatccgagaagctactacaaatgtaatcag |
109 |
Q |
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| T |
30409195 |
aggagcaaagacctcagaggatggttataattggagaaaatatggccaaaaacaagtaaaaggtagtgaatatccgagaagctactacaaatgtactcat |
30409096 |
T |
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| Q |
110 |
tctaattgtcaggtcaggaaaaaggtggaaagatcacatgatggcaacataagagaaattatttacagtggtaatcacaaccatgcaaaacc |
201 |
Q |
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| T |
30409095 |
tctaattgtcaggtcaagaaaaaggtggaaagatcacacgatggccacataacagaaattatttacaagggtaatcataaccatgcaaaacc |
30409004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 26332619 - 26332563
Alignment:
| Q |
29 |
gatggttataattggagaaaatatggccaaaaacaagtaaaaggcagtgaatatccg |
85 |
Q |
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| T |
26332619 |
gatggttacaattggagaaaatatggacagaaacaagtgaaaggaagcgaaaatccg |
26332563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 31615428 - 31615355
Alignment:
| Q |
29 |
gatggttataattggagaaaatatggccaaaaacaagtaaaaggcagtgaatatccgagaagctactacaaatg |
102 |
Q |
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| T |
31615428 |
gatggatacaattggcgaaaatatggacaaaagcaagttaagggaagtgaaaatccgagaagttactacaaatg |
31615355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 26967128 - 26967067
Alignment:
| Q |
29 |
gatggttataattggagaaaatatggccaaaaacaagtaaaaggcagtgaatatccgagaag |
90 |
Q |
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| T |
26967128 |
gatggatacaattggagaaaatatggacaaaaacaagtgaaaggaagtgaaaatccaagaag |
26967067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 119
Target Start/End: Original strand, 2056298 - 2056390
Alignment:
| Q |
27 |
aggatggttataattggagaaaatatggccaaaaacaagtaaaaggcagtgaatatccgagaagctactacaaatgtaatcagtctaattgtc |
119 |
Q |
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| T |
2056298 |
aggatggatataattggagaaaatatggccaaaagcaagttaagggtagcgagtaccctcgaagttactacaagtgtactcattcaaattgtc |
2056390 |
T |
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