View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11025_low_29 (Length: 211)
Name: NF11025_low_29
Description: NF11025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11025_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 14773751 - 14773927
Alignment:
| Q |
15 |
atgaacaaaaactgcaatgtcacatgaggccaaagactccttggtggccagcagctctgtgactccacattcagaaatctctctcaacacaagatatttt |
114 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14773751 |
atgaacaaaaactgca-tgtcacatgaggccaaagactccttgttggccagcagctctgtgactccacattcagaaatctctctcaacacaagatatttt |
14773849 |
T |
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| Q |
115 |
ttgttttcctacaaataaaacgataaatcatgaattggaagaaataaatgccaacacacaaaatgaatacatggaatt |
192 |
Q |
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| T |
14773850 |
ttgttttcctacaaataaaacgatgaatcatgaattggaagaaataaatgccaaaacacaaaatgaatacatggaatt |
14773927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 17881020 - 17881158
Alignment:
| Q |
18 |
aacaaaaactgcaatgtcacatgaggccaaagactccttggtggccagcagctctgtgactccacattcagaaatctctctcaacacaagatattttttg |
117 |
Q |
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||||||||| ||||||||||||||||||||||||||||| |||| ||||||| ||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
17881020 |
aacaaaaaccgcaatgtcacatgaggccaaagactccttattggctagcagctttgtgactccaccttcagaaatctctctcagcacaagatattttttg |
17881119 |
T |
|
| Q |
118 |
ttttcctacaaataaaacgataaatcatgaattggaaga |
156 |
Q |
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|||||||||||| |||| ||| || | |||||||||||| |
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| T |
17881120 |
ttttcctacaaacaaaatgattaaccgtgaattggaaga |
17881158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 15048253 - 15048403
Alignment:
| Q |
18 |
aacaaaaactgcaatgtcacatgaggccaaagactccttggtggccagcagctctgtgactccacattcagaaatctctctcaacacaagatattttttg |
117 |
Q |
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|||||||| |||||||||||||||||||||||||| ||| |||| ||||||| ||||||||| | ||||||||||||||||| |||||||||||||||| |
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| T |
15048253 |
aacaaaaattgcaatgtcacatgaggccaaagacttcttattggctagcagctttgtgactcctccttcagaaatctctctcagcacaagatattttttg |
15048352 |
T |
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| Q |
118 |
ttttcctacaaataaaacgataaatcatgaattggaagaaataaatgccaa |
168 |
Q |
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|||||||||||| |||| ||| || | |||| ||||||| ||||||||||| |
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| T |
15048353 |
ttttcctacaaacaaaatgattaaccgtgaactggaagatataaatgccaa |
15048403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 161
Target Start/End: Original strand, 15015513 - 15015659
Alignment:
| Q |
15 |
atgaacaaaaactgcaatgtcacatgaggccaaagactccttggtggccagcagctctgtgactccacattcagaaatctctctcaacacaagatatttt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||| | || ||||||| ||| ||||||| ||||||||||||||||| ||||| ||||||| |
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| T |
15015513 |
atgaacaaaaactgcaatgtcacatgagcccagagactccttgtttgctagcagctttgtaactccaccttcagaaatctctctcagcacaatatatttt |
15015612 |
T |
|
| Q |
115 |
ttgttttcctacaaataaaacgataaatcatgaattggaagaaataa |
161 |
Q |
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||||||||||||||| |||| | |||| ||||||||||||| |||| |
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| T |
15015613 |
ttgttttcctacaaacaaaatggtaaacaatgaattggaagatataa |
15015659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 15 - 165
Target Start/End: Original strand, 54158964 - 54159114
Alignment:
| Q |
15 |
atgaacaaaaactgcaatgtcacatgaggccaaagactccttggtggccagcagctctgtgactccacattcagaaatctctctcaacacaagatatttt |
114 |
Q |
| |
|
|||||||| || |||||||||||| ||||||||||||||||| | ||||||||| || | |||||| ||||| ||||||||||| |||||||||||| |
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| T |
54158964 |
atgaacaataattgcaatgtcacaagaggccaaagactccttattcgccagcagccctttaactccatcttcaggaatctctctcagcacaagatatttc |
54159063 |
T |
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| Q |
115 |
ttgttttcctacaaataaaacgataaatcatgaattggaagaaataaatgc |
165 |
Q |
| |
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|| ||| ||| |||| |||| |||||| ||| ||| ||||||| |||||| |
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| T |
54159064 |
ttctttccctgcaaacaaaatgataaaacataaatatgaagaaagaaatgc |
54159114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 15 - 141
Target Start/End: Complemental strand, 53868346 - 53868220
Alignment:
| Q |
15 |
atgaacaaaaactgcaatgtcacatgaggccaaagactccttggtggccagcagctctgtgactccacattcagaaatctctctcaacacaagatatttt |
114 |
Q |
| |
|
|||||| |||||||||| |||||| ||||||||||||| || | |||||||||||| | |||||| ||||| ||| ||||||| |||||||||||| |
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| T |
53868346 |
atgaacgaaaactgcaacgtcacaagaggccaaagacttattattcgccagcagctctctaactccatcttcaggaatttctctcagcacaagatatttc |
53868247 |
T |
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| Q |
115 |
ttgttttcctacaaataaaacgataaa |
141 |
Q |
| |
|
|||||| ||| |||| |||| |||||| |
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| T |
53868246 |
ttgtttccctgcaaacaaaatgataaa |
53868220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 15 - 165
Target Start/End: Original strand, 51365876 - 51366025
Alignment:
| Q |
15 |
atgaacaaaaactgcaatgtcacatgaggccaaagactccttggtggccagcagctct-gtgactccacattcagaaatctctctcaacacaagatattt |
113 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||| | |||||||| ||| |||||||| |||| ||||||| |||||||||||||||| |
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| T |
51365876 |
atgaacaaaaatggcaatgtcacaagaggccaaagactccttattagccagcagttctcttgactccatcttcatgaatctctttcaacacaagatattt |
51365975 |
T |
|
| Q |
114 |
tttgttttcctacaaataaaacgataaatcatgaattggaagaaataaatgc |
165 |
Q |
| |
|
|||||| ||| ||| | || |||||| |||||| | ||||||| |||||| |
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| T |
51365976 |
cttgtttccctgcaact--aatgataaaacatgaacttgaagaaagaaatgc |
51366025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 36876577 - 36876445
Alignment:
| Q |
19 |
acaaaaactgcaatgtcacatgaggccaaagactccttggtggccagcagctctgtgactccacattcagaaatctctctcaacacaagatattttttgt |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||| ||| || ||| ||| ||| | ||||||| ||||||| ||||||||| ||| |
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| T |
36876577 |
acaaaaactgcaatgtcacatgaggccaaagactccttgtcggccaccagtcttgcaacttcaccttctggaatctctttcaacacgagatattttctgt |
36876478 |
T |
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| Q |
119 |
tttcctacaaataaaacgat-aaatcatgaatt |
150 |
Q |
| |
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|||||| |||| ||||| || |||||||||||| |
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| T |
36876477 |
tttcctgcaaacaaaacaataaaatcatgaatt |
36876445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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