View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11025_low_3 (Length: 487)
Name: NF11025_low_3
Description: NF11025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11025_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 18 - 476
Target Start/End: Original strand, 29718410 - 29718868
Alignment:
| Q |
18 |
agaagctgctccgtgcttggaataagcgcgattctgtgtgccggtctgcttcaatgtggcacctgctttctcctccaagctctattcaatatattttcca |
117 |
Q |
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| T |
29718410 |
agaagctgctccgtgtttggaataagcgcgattctgtgtgccagtctgcttcaatgtggcacctgctttctcctccaagctctattcaatatactttcca |
29718509 |
T |
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| Q |
118 |
tcattattggcattaaattttgttttgttgtccttccagtctttatgcttattgctatatgcgttggcttttatgcaattcaattgcgtgtgataattat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29718510 |
tcattattggcattaaattttgttttgttgtccttccactctttatgcttattgctatatgcgttggcttttatgcaattcaattgcgtgtgataattat |
29718609 |
T |
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| Q |
218 |
cgagtgataacattaatagtagtataaataaaattgaagctatacttggaagcagactctttagcttaacttggaagcaacaagaatctcagttagaaat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29718610 |
cgagtgataacattaatagtagtataaataaaattgaagctatacttggaagcagactctttagcttaacttggaagcaacaagaatctcagttagaaat |
29718709 |
T |
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| Q |
318 |
gaagaagctaagaagggatggagtgtgaattttaaagattggttctgctttcaattttccaacttttaggaaatgaattagaataaattgagtttgaata |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29718710 |
gaagaagctaagaagggatggagtgtgaattttaaagattggttctgctttcaattttccaacttttaggaaatgaattagaataaattgagtttgaata |
29718809 |
T |
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| Q |
418 |
aaaagctttcaatttttcttatcttagttgctgtgtgtctgatgagattaaatgttcat |
476 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29718810 |
gaaagctttcaatttatcttatcttagttgctgtgtgtctgatgagattaaatgttcat |
29718868 |
T |
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