View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11025_low_4 (Length: 468)

Name: NF11025_low_4
Description: NF11025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11025_low_4
NF11025_low_4
[»] chr6 (5 HSPs)
chr6 (22-452)||(3523991-3524422)
chr6 (230-452)||(34213821-34214042)
chr6 (230-452)||(21880890-21881102)
chr6 (230-337)||(20740071-20740177)
chr6 (322-386)||(22577394-22577459)
[»] chr5 (17 HSPs)
chr5 (230-452)||(7767464-7767685)
chr5 (226-450)||(27170549-27170772)
chr5 (230-452)||(6989302-6989511)
chr5 (231-452)||(26656197-26656416)
chr5 (231-452)||(26927784-26928003)
chr5 (236-452)||(1157657-1157860)
chr5 (243-383)||(1377706-1377845)
chr5 (237-452)||(6030761-6030973)
chr5 (230-337)||(41356053-41356159)
chr5 (230-434)||(21600662-21600852)
chr5 (230-337)||(18696471-18696580)
chr5 (230-334)||(7270121-7270224)
chr5 (228-303)||(38959174-38959247)
chr5 (322-398)||(25444534-25444611)
chr5 (345-452)||(7271392-7271495)
chr5 (370-452)||(41355942-41356024)
chr5 (373-452)||(36608164-36608244)
[»] chr7 (6 HSPs)
chr7 (236-452)||(1778050-1778266)
chr7 (240-452)||(3301902-3302114)
chr7 (230-393)||(39020680-39020855)
chr7 (230-336)||(29550061-29550166)
chr7 (238-452)||(11698780-11698981)
chr7 (369-409)||(47588737-47588777)
[»] chr1 (7 HSPs)
chr1 (242-448)||(39709440-39709645)
chr1 (296-453)||(34654467-34654624)
chr1 (230-452)||(615207-615427)
chr1 (230-337)||(25791100-25791206)
chr1 (285-452)||(34117577-34117731)
chr1 (230-318)||(11408355-11408443)
chr1 (329-370)||(26237085-26237126)
[»] chr2 (9 HSPs)
chr2 (230-452)||(17374779-17374999)
chr2 (230-427)||(17282401-17282584)
chr2 (230-452)||(1552024-1552233)
chr2 (230-452)||(3921070-3921279)
chr2 (230-452)||(4869095-4869314)
chr2 (237-452)||(1894887-1895090)
chr2 (237-357)||(11163571-11163687)
chr2 (300-452)||(34659786-34659938)
chr2 (334-409)||(3257990-3258066)
[»] scaffold0005 (2 HSPs)
scaffold0005 (236-432)||(250744-250939)
scaffold0005 (369-409)||(47745-47785)
[»] chr4 (12 HSPs)
chr4 (236-432)||(14566436-14566631)
chr4 (231-453)||(23054707-23054928)
chr4 (329-452)||(6409578-6409701)
chr4 (230-450)||(34227432-34227639)
chr4 (230-452)||(53201728-53201939)
chr4 (230-325)||(47519000-47519094)
chr4 (231-452)||(24958026-24958248)
chr4 (230-337)||(31360602-31360708)
chr4 (364-452)||(47518888-47518976)
chr4 (329-439)||(19657909-19658019)
chr4 (376-452)||(23533066-23533143)
chr4 (369-409)||(14791946-14791986)
[»] chr3 (7 HSPs)
chr3 (230-394)||(43275415-43275578)
chr3 (230-452)||(18270148-18270368)
chr3 (237-409)||(893419-893590)
chr3 (237-319)||(3364057-3364139)
chr3 (369-452)||(25498548-25498632)
chr3 (300-394)||(3576808-3576901)
chr3 (322-392)||(14993528-14993599)
[»] chr8 (7 HSPs)
chr8 (307-452)||(5994151-5994296)
chr8 (230-448)||(10408290-10408507)
chr8 (236-452)||(20860767-20860989)
chr8 (334-451)||(6443585-6443702)
chr8 (230-289)||(5994089-5994148)
chr8 (256-318)||(6443498-6443560)
chr8 (322-379)||(13995274-13995332)
[»] scaffold0009 (1 HSPs)
scaffold0009 (230-398)||(53927-54094)


Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-162; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 22 - 452
Target Start/End: Complemental strand, 3524422 - 3523991
Alignment:
Q  22 aagaaaaagagagataagggtaagtggctatatgctgatattacgtaagatgtttttaacttgtttgagtttgagtcagttagatattgttttgttttgt 121  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3524422 aagaaaaagagagataagggtaagtggctatatgctgatactacgtaagatgtttttaacttgtttgagtttgagtcagttagatattgttttgttttgt 3524323  T
Q  122 gaattgtgattctcacactttccaagtactat--gtacaaatacaactaccacatg---taacttaccttccacaatactaactgtcatatttgccgaca 216  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||   |||||||||||||||||||||||| ||||||       |||    
T  3524322 gaattgtgattctcacactttccaagtactatatgtacaaatacaactaccacatggagtaacttaccttccacaatactaaccgtcataa------aca 3524229  T
Q  217 agnnnnnnn--tccgaaaaatctataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacga 314  Q
    ||         ||| |||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||    
T  3524228 agaaaaaaaaatccaaaaaatctataggaaacgcctcttaacaaagggctatctccaaaatcaataaatagaaacaccaacaacaaagctatcaccatga 3524129  T
Q  315 tcaacgaaacaacgtaaacaaaagttgtatcaaaatcctcaaacattatcacaactgccacaaaaacaacttacaccacctacaatctgctgctcccgca 414  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| | ||    
T  3524128 tcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacatcatcacaactgccacaaaaacaacttacatcacctacaatctgctgctcacaca 3524029  T
Q  415 caagccccgaacaacaacataaaaacctacacaacaac 452  Q
    ||| |||||||||||||||||| ||| |||||||||||    
T  3524028 caacccccgaacaacaacataataacttacacaacaac 3523991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 230 - 452
Target Start/End: Complemental strand, 34214042 - 34213821
Alignment:
Q  230 aaaaatctataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaacgaaacaacgt 329  Q
    ||||| |||||| ||| ||||||||||||||  ||||| || ||| |||||||||| | |||||| ||||||| || ||||||||||||| ||||||| |    
T  34214042 aaaaacctatagaaaatgcctcctaacaaaggactatctccgaaaacaataaatagtagcaccaa-aacaaagttaacaccacgatcaacaaaacaacat 34213944  T
Q  330 aaacaaaagttgtatcaaaatcctcaaacattatcacaactgccacaaaaacaacttacaccacctacaatctgctgctcccgcacaagccccgaacaac 429  Q
    |||||||||||||| |||||||| |||||||  ||| | |||||||||||||||||| ||||||| ||| | |||||||  | ||||| |||| ||||||    
T  34213943 aaacaaaagttgtaccaaaatccccaaacatcctcatagctgccacaaaaacaactttcaccacccacattttgctgcttgcacacaacccccaaacaac 34213844  T
Q  430 aacataaaaacctacacaacaac 452  Q
    ||| |||||||||||||||||||    
T  34213843 aacttaaaaacctacacaacaac 34213821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 230 - 452
Target Start/End: Original strand, 21880890 - 21881102
Alignment:
Q  230 aaaaatctataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaacgaaacaacgt 329  Q
    ||||| ||||||||||||||||| ||||||| |||||| |||||| |||        | |||||| |||||||||| |||||||||||||||| |||| |    
T  21880890 aaaaacctataggaaacgcctcccaacaaagggctatctccaaaaacaa--------agcaccaa-aacaaagctaacaccacgatcaacgaagcaacat 21880980  T
Q  330 aaacaaaagttgtatcaaaatcctcaaacattatcacaactgccacaaaaacaacttacaccacctacaatctgctgctcccgcacaagccccgaacaac 429  Q
    |||||||||||||| ||||||||||||||||  |||||||||||||||||| ||||| ||||||| ||| || ||||||| | ||||| ||| ||||| |    
T  21880981 aaacaaaagttgtaccaaaatcctcaaacatcgtcacaactgccacaaaaataacttccaccacccacattccgctgctcgcacacaacccctgaacacc 21881080  T
Q  430 aacataaaaacctacacaacaac 452  Q
    || || | |||||||||||||||    
T  21881081 aa-attacaacctacacaacaac 21881102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 230 - 337
Target Start/End: Original strand, 20740071 - 20740177
Alignment:
Q  230 aaaaatctataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaacgaaacaacgt 329  Q
    ||||||||||| ||||||||||||||||||| |||||| || ||||||||||||||||||||||| || | ||||| ||||||||||||| ||||||| |    
T  20740071 aaaaatctataagaaacgcctcctaacaaagggctatctccgaaatcaataaatagaaacaccaa-aatatagctaacaccacgatcaacaaaacaacat 20740169  T
Q  330 aaacaaaa 337  Q
    ||||||||    
T  20740170 aaacaaaa 20740177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 322 - 386
Target Start/End: Original strand, 22577394 - 22577459
Alignment:
Q  322 aacaacgtaaacaaaagttgtatcaaaatcctcaaacattatcacaa-ctgccacaaaaacaactt 386  Q
    ||||||||||||||| |||||| ||||  |||||||||| ||||||| | ||||||||||||||||    
T  22577394 aacaacgtaaacaaaggttgtaccaaatccctcaaacatcatcacaagcagccacaaaaacaactt 22577459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 119; Significance: 1e-60; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 230 - 452
Target Start/End: Complemental strand, 7767685 - 7767464
Alignment:
Q  230 aaaaatctataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaacgaaacaacgt 329  Q
    ||||| ||||||||||||||||||||||||| | |||| |||||||||||||||| ||||||||| |||||||||| |||||||||||||| |||||| |    
T  7767685 aaaaacctataggaaacgcctcctaacaaagggttatctccaaaatcaataaatataaacaccaa-aacaaagctaacaccacgatcaacggaacaacat 7767587  T
Q  330 aaacaaaagttgtatcaaaatcctcaaacattatcacaactgccacaaaaacaacttacaccacctacaatctgctgctcccgcacaagccccgaacaac 429  Q
    |||||||||||||| ||||||||||||||||  || ||||||||||||||||||||| ||||||| ||| |  ||||||| | ||||| ||  ||||| |    
T  7767586 aaacaaaagttgtaccaaaatcctcaaacatcgtcgcaactgccacaaaaacaacttccaccacccacatttcgctgctcgcacacaacccttgaacacc 7767487  T
Q  430 aacataaaaacctacacaacaac 452  Q
    ||| |||||||||||||||||||    
T  7767486 aacttaaaaacctacacaacaac 7767464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 226 - 450
Target Start/End: Complemental strand, 27170772 - 27170549
Alignment:
Q  226 tccgaaaaatctataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaacgaaaca 325  Q
    ||||||||| ||||||||||||||||||||||||  |||||| || ||| ||||||||||||||||||| |||||||||| |||||||||||| ||||||    
T  27170772 tccgaaaaacctataggaaacgcctcctaacaaatggctatctccgaaaccaataaatagaaacaccaa-aacaaagctaacaccacgatcaatgaaaca 27170674  T
Q  326 acgtaaacaaaagttgtatcaaaatcctcaaacattatcacaactgccacaaaaacaacttacaccacctacaatctgctgctcccgcacaagccccgaa 425  Q
    || ||||||||||||||| ||||||||||||||||  |||||||||||||||||| ||||| ||||||| ||| ||  || ||| | ||||   || |||    
T  27170673 acataaacaaaagttgtaccaaaatcctcaaacatcgtcacaactgccacaaaaataacttccaccacccacattccactactcgcacacagcaccagaa 27170574  T
Q  426 caacaacataaaaacctacacaaca 450  Q
    || |||| |||||||||||||||||    
T  27170573 caccaacttaaaaacctacacaaca 27170549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 230 - 452
Target Start/End: Original strand, 6989302 - 6989511
Alignment:
Q  230 aaaaatctataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaacgaaacaacgt 329  Q
    ||||| |||||||||||| |||||||||||| |||||| || ||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||| |    
T  6989302 aaaaacctataggaaacgtctcctaacaaagggctatctccgaaatcaataaatagaaaca-caaaaacaaagctaacaccacgatcaacgaaacaacat 6989400  T
Q  330 aaacaaaagttgtatcaaaatcctcaaacattatcacaactgccacaaaaacaacttacaccacctacaatctgctgctcccgcacaagccccgaacaac 429  Q
    |||            |||||||||||| |||  ||||||||||||||||||||||||  |||||| ||| || ||||||| | ||||| ||| ||||| |    
T  6989401 aaa------------caaaatcctcaagcatcgtcacaactgccacaaaaacaacttctaccacccacattccgctgctcgcacacaacccctgaacacc 6989488  T
Q  430 aacataaaaacctacacaacaac 452  Q
    ||| ||||||||||||| |||||    
T  6989489 aacttaaaaacctacaccacaac 6989511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 231 - 452
Target Start/End: Original strand, 26656197 - 26656416
Alignment:
Q  231 aaaatctataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaacgaaacaacgta 330  Q
    |||| |||||||||||||||||||||||||  ||| | || |||||||| |||||||||||||| ||| || ||| || |||||||||||||||||| ||    
T  26656197 aaaacctataggaaacgcctcctaacaaaggactaactccgaaatcaattaatagaaacaccaa-aaccaaactaacaacacgatcaacgaaacaacata 26656295  T
Q  331 aacaaaagttgtatcaaaatcctcaaacattatcacaactgccacaaaaacaacttacaccacctacaatctgctgctcccgcacaagccccgaacaaca 430  Q
    |||| | |||||| ||||||| ||||||||  |||||||  ||||||||||||||| ||||||| | | |||||| ||  | ||| | ||| ||||| ||    
T  26656296 aacatatgttgtaccaaaatcttcaaacatcttcacaac-accacaaaaacaactttcaccacccatattctgcttcttgcacacgacccctgaacatca 26656394  T
Q  431 acataaaaacctacacaacaac 452  Q
    || |||||||||||||||||||    
T  26656395 acttaaaaacctacacaacaac 26656416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 231 - 452
Target Start/End: Original strand, 26927784 - 26928003
Alignment:
Q  231 aaaatctataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaacgaaacaacgta 330  Q
    |||| |||||||||||||||||||||||||  ||| | || |||||||| |||||||||||||| ||| || ||| || |||||||||||||||||| ||    
T  26927784 aaaacctataggaaacgcctcctaacaaaggactaactccgaaatcaattaatagaaacaccaa-aaccaaactaacaacacgatcaacgaaacaacata 26927882  T
Q  331 aacaaaagttgtatcaaaatcctcaaacattatcacaactgccacaaaaacaacttacaccacctacaatctgctgctcccgcacaagccccgaacaaca 430  Q
    |||| | |||||| ||||||| ||||||||  |||||||  ||||||||||||||| ||||||| | | |||||| ||  | ||| | ||| ||||| ||    
T  26927883 aacatatgttgtaccaaaatcttcaaacatcttcacaac-accacaaaaacaactttcaccacccatattctgcttcttgcacacgacccctgaacatca 26927981  T
Q  431 acataaaaacctacacaacaac 452  Q
    || |||||||||||||||||||    
T  26927982 acttaaaaacctacacaacaac 26928003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 236 - 452
Target Start/End: Complemental strand, 1157860 - 1157657
Alignment:
Q  236 ctataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaacgaaacaacgtaaacaa 335  Q
    ||||| ||||||||||||||||||  |||||| || ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||       
T  1157860 ctataagaaacgcctcctaacaaatggctatctccgaaatcaataaatagaaacaccaa-aacaaagctaacaccacgatcaacgaaacaacataaa--- 1157765  T
Q  336 aagttgtatcaaaatcctcaaacattatcacaactgccacaaaaacaacttacaccacctacaatctgctgctcccgcacaagccccgaacaacaacata 435  Q
             |||||||||||| |||  ||||||||||||||||||||||||  |||||| ||| || ||||||| | || || ||| ||||| |||| ||    
T  1157764 ---------caaaatcctcaagcatcgtcacaactgccacaaaaacaacttctaccacccacattccgctgctcgcacataacccctgaacaccaactta 1157674  T
Q  436 aaaacctacacaacaac 452  Q
    |||| |||||| |||||    
T  1157673 aaaatctacaccacaac 1157657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 243 - 383
Target Start/End: Original strand, 1377706 - 1377845
Alignment:
Q  243 aaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaacgaaacaacgtaaacaaaagttgt 342  Q
    ||||||||||||||||||   |||| || |||| |||||||||||||||||| |||||| ||| ||||||||||||||||||||| ||| |||||||| |    
T  1377706 aaacgcctcctaacaaaggattatctccgaaattaataaatagaaacaccaa-aacaaaactaacaccacgatcaacgaaacaacataatcaaaagttat 1377804  T
Q  343 atcaaaatcctcaaacattatcacaactgccacaaaaacaa 383  Q
    |  |||||||| ||||||  || ||||||||||||||||||    
T  1377805 acaaaaatccttaaacatcgtcgcaactgccacaaaaacaa 1377845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 237 - 452
Target Start/End: Complemental strand, 6030973 - 6030761
Alignment:
Q  237 tataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaacgaaacaacgtaaacaaa 336  Q
    |||||||||||||||||| ||||| || ||| |  |||||||| |||||||||||||| ||| || ||| || |||||||||||||||||| |||||| |    
T  6030973 tataggaaacgcctcctagcaaagggccatctctgaaatcaattaatagaaacaccaa-aaccaatctaacagcacgatcaacgaaacaacataaacata 6030875  T
Q  337 agttgtatcaaaatcctcaaacattatcacaactgccacaaaaacaacttacaccacctacaatctgctgctcccgcacaagccccgaacaacaacataa 436  Q
     || ||| ||||||||||||||||  |||||||  ||||||||||||||| ||||| | | | || ||||||| | || || ||| ||||| |||| |||    
T  6030874 tgtggtaccaaaatcctcaaacatcgtcacaac-accacaaaaacaactttcaccatccatattccgctgctcgcacaaaacccctgaacaccaacttaa 6030776  T
Q  437 aaacctacacaacaac 452  Q
    ||| ||||||||||||    
T  6030775 aaa-ctacacaacaac 6030761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 230 - 337
Target Start/End: Complemental strand, 41356159 - 41356053
Alignment:
Q  230 aaaaatctataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaacgaaacaacgt 329  Q
    ||||| ||||||| ||| |||||||||||||  ||||| ||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||| |    
T  41356159 aaaaacctataggtaacacctcctaacaaaggactatctccaaaatcaataaatagaaacactaa-aacaaagctaacaccacgatcaacgaaacaacat 41356061  T
Q  330 aaacaaaa 337  Q
    ||||||||    
T  41356060 aaacaaaa 41356053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 230 - 434
Target Start/End: Original strand, 21600662 - 21600852
Alignment:
Q  230 aaaaatctataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaacgaaacaacgt 329  Q
    ||||| |||||||||||| ||||||||||||  ||||  |   |||||||||||||||||||||| |||||||||| || ||||| |||||||||||| |    
T  21600662 aaaaacctataggaaacgtctcctaacaaaggactatatctggaatcaataaatagaaacaccaa-aacaaagctaacatcacgaacaacgaaacaacat 21600760  T
Q  330 aaacaaaagttgtatcaaaatcctcaaacattatcacaactgccacaaaaacaacttacaccacctacaatctgctgctcccgcacaagccccgaacaac 429  Q
    |||            ||||||||||||||||  ||||||||||||||||||||||||  |||||| ||| || ||||||| | ||||| ||| ||||| |    
T  21600761 aaa------------caaaatcctcaaacatcgtcacaactgccacaaaaacaacttctaccacccacattccgctgctcgcacacaa-ccctgaacacc 21600847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 230 - 337
Target Start/End: Original strand, 18696471 - 18696580
Alignment:
Q  230 aaaaatctataggaaacgcctcctaacaaa---gagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaacgaaacaa 326  Q
    ||||| ||||| |||||||||||||| |||   | |||||| || ||||||||||||||||||||||| |||||||||| ||||| |||||| |||||||    
T  18696471 aaaaaactataagaaacgcctcctaataaatgagggctatctccgaaatcaataaatagaaacaccaa-aacaaagctaacaccatgatcaaagaaacaa 18696569  T
Q  327 cgtaaacaaaa 337  Q
    | |||||||||    
T  18696570 cataaacaaaa 18696580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 230 - 334
Target Start/End: Original strand, 7270121 - 7270224
Alignment:
Q  230 aaaaatctataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaacgaaacaacgt 329  Q
    ||||| |||||||||||||  |||||||||| |||| | |  |||||||| |||||||||||||| ||| |||||| || |||||||||||||||||| |    
T  7270121 aaaaacctataggaaacgcaacctaacaaagggctaactctgaaatcaattaatagaaacaccaa-aaccaagctaacagcacgatcaacgaaacaacat 7270219  T
Q  330 aaaca 334  Q
    |||||    
T  7270220 aaaca 7270224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 228 - 303
Target Start/End: Complemental strand, 38959247 - 38959174
Alignment:
Q  228 cgaaaaatctataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagc 303  Q
    ||||||| ||||||||||||||||||||||||| |||||| ||  |||||||||||||||||||||| ||||||||    
T  38959247 cgaaaaacctataggaaacgcctcctaacaaagggctatctcc-gaatcaataaatagaaacaccaa-aacaaagc 38959174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 322 - 398
Target Start/End: Complemental strand, 25444611 - 25444534
Alignment:
Q  322 aacaacgtaaacaaaagttgtatcaaaatcctcaaacattatcacaa-ctgccacaaaaacaacttacaccacctaca 398  Q
    |||||| ||||||||||||| ||||||| |||||||||| ||| ||| |||| ||||||||||||| |||||||||||    
T  25444611 aacaacataaacaaaagttggatcaaaaccctcaaacatcatcgcaagctgctacaaaaacaacttccaccacctaca 25444534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 452
Target Start/End: Original strand, 7271392 - 7271495
Alignment:
Q  345 caaaatcctcaaacattatcacaactgccacaaaaacaacttacaccacctacaatctgctgctcccgcacaagccccgaacaacaacataaaaacctac 444  Q
    ||||||||||||||||  |||||||    ||||||||||||| ||||||| | | || ||||||| | ||||| ||| ||||  |||| |||||||||||    
T  7271392 caaaatcctcaaacatcgtcacaac----acaaaaacaactttcaccacccatattccgctgctcgcacacaacccctgaacgtcaacttaaaaacctac 7271487  T
Q  445 acaacaac 452  Q
    ||| ||||    
T  7271488 acagcaac 7271495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 452
Target Start/End: Complemental strand, 41356024 - 41355942
Alignment:
Q  370 tgccacaaaaacaacttacaccacctacaatctgctgctcccgcacaagccccgaacaacaacataaaaacctacacaacaac 452  Q
    ||||||||||| |||||  |||||| ||| || ||||||| | ||||| ||| ||||| |||| ||||||||||||| |||||    
T  41356024 tgccacaaaaataacttctaccacccacattccgctgctcgcacacaacccctgaacaccaacttaaaaacctacaccacaac 41355942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 452
Target Start/End: Complemental strand, 36608244 - 36608164
Alignment:
Q  373 cacaaaaacaacttacaccacctacaatctgctgctcccgcacaagccccgaacaacaacat-aaaaacctacacaacaac 452  Q
    |||||||||||||| |||||| |||| || ||||||| ||||||| |||  ||||||||  | ||||||| ||||||||||    
T  36608244 cacaaaaacaactttcaccacttacactccgctgctcgcgcacaacccctaaacaacaatgtcaaaaaccaacacaacaac 36608164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 5e-57; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 236 - 452
Target Start/End: Original strand, 1778050 - 1778266
Alignment:
Q  236 ctataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaacgaaacaacgtaaacaa 335  Q
    |||||||||| ||||| || ||||||| |||| |  ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||    
T  1778050 ctataggaaatgcctcgtatcaaagagttatctctgaaatcaataaatagaaacaccaaaaacaaagttatcaccacgatcaacgaaacaacataaacaa 1778149  T
Q  336 aagttgtatcaaaatcctcaaacattatcacaactgccacaaaaacaacttacaccacctacaatctgctgctcccgcacaagccccgaacaacaacata 435  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||  |  || ||    ||||| |||||||||| ||| ||    
T  1778150 aagttgtaccaaaatcctcaaacattgtcacaactgccacaaaaacaacttccaccacctacataccactactggtacacaacccccgaacaataacgta 1778249  T
Q  436 aaaacctacacaacaac 452  Q
    |||| ||||||||||||    
T  1778250 aaaatctacacaacaac 1778266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 240 - 452
Target Start/End: Original strand, 3301902 - 3302114
Alignment:
Q  240 aggaaacgcctcctaa-caaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaacgaaacaacgtaaacaaaag 338  Q
    |||||||||||||||| ||||  |||||| | |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||| |||    
T  3301902 aggaaacgcctcctaaacaaatggctatctctaaaatcaataaatagaaacaccaa-aacaaagctaacaccacgatcaacgaaacaacataaacataag 3302000  T
Q  339 ttgtatcaaaatcctcaaacattatcacaactgccacaaaaacaacttacaccacctacaatctgctgctcccgcacaagccccgaacaacaacataaaa 438  Q
    ||||| ||||||||||||||||  |||||||||||||||||| ||||| ||||||| ||| || ||||||| | ||||  ||| ||||| |||| |||||    
T  3302001 ttgtaccaaaatcctcaaacatggtcacaactgccacaaaaataacttccaccacccacattccgctgctcacacacaccccctgaacaccaacttaaaa 3302100  T
Q  439 acctacacaacaac 452  Q
    ||||||||||||||    
T  3302101 acctacacaacaac 3302114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 230 - 393
Target Start/End: Complemental strand, 39020855 - 39020680
Alignment:
Q  230 aaaaatctataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaaca------------acaaagctatcaccacgatca 317  Q
    ||||| |||| |||||||||||||||||||   ||||  || ||||||||||||||||||||||| |            ||||||||| |||||| ||||    
T  39020855 aaaaacctatgggaaacgcctcctaacaaatgactatatccgaaatcaataaatagaaacaccaaaacaatccaccaaaacaaagctaacaccacaatca 39020756  T
Q  318 acgaaacaacgtaaacaaaagttgtatcaaaatcctcaaacattatcacaactgccacaaaaacaacttacaccac 393  Q
    |||||||||| ||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  39020755 acgaaacaacataaacaaaagttgttacaaaatcctcaaacattgtcacaactgccacaaaaacaacttccaccac 39020680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 230 - 336
Target Start/End: Original strand, 29550061 - 29550166
Alignment:
Q  230 aaaaatctataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaacgaaacaacgt 329  Q
    |||||| ||||| ||||||||| |||||||| |||||| || ||||||||||||||||||||||| || ||||||| ||||||||||||||||||||| |    
T  29550061 aaaaatatatagaaaacgcctcataacaaagggctatctccgaaatcaataaatagaaacaccaa-aataaagctaacaccacgatcaacgaaacaacat 29550159  T
Q  330 aaacaaa 336  Q
    |||||||    
T  29550160 aaacaaa 29550166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 238 - 452
Target Start/End: Complemental strand, 11698981 - 11698780
Alignment:
Q  238 ataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaacgaaacaacgtaaacaaaa 337  Q
    ||||||||  ||||||||||||| || ||| || ||||||||||||||||||||||| ||||| || | |||| ||| |||||||||||| |||||||||    
T  11698981 ataggaaatacctcctaacaaagggccatctccgaaatcaataaatagaaacaccaa-aacaatgcgaacacctcgagcaacgaaacaacataaacaaaa 11698883  T
Q  338 gttgtatcaaaatcctcaaacattatcacaactgccacaaaaacaacttacaccacctacaatctgctgctcccgcacaagccccgaacaacaacataaa 437  Q
                || |||| |||  ||||||||||||||||||||||||  |||||| ||| |||||||||| | ||||| ||| ||||| || | ||||    
T  11698882 ------------tcatcaagcatcgtcacaactgccacaaaaacaacttctaccacccacattctgctgctcgcacacaacccctgaacaccagcttaaa 11698795  T
Q  438 aacctacacaacaac 452  Q
    ||||||||| |||||    
T  11698794 aacctacaccacaac 11698780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 409
Target Start/End: Original strand, 47588737 - 47588777
Alignment:
Q  369 ctgccacaaaaacaacttacaccacctacaatctgctgctc 409  Q
    |||||||||||||||||| ||||||||||| ||||||||||    
T  47588737 ctgccacaaaaacaacttccaccacctacattctgctgctc 47588777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 2e-53; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 242 - 448
Target Start/End: Complemental strand, 39709645 - 39709440
Alignment:
Q  242 gaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaacgaaacaacgtaaacaaaagttg 341  Q
    ||||||| ||||||||||| | | ||||  ||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||  ||||||||||||    
T  39709645 gaaacgcttcctaacaaagggttgtccctgaaaccaataaatagaaacaccaa-aacaaagctaacaccacgatcaacgaaacaacaaaaacaaaagttg 39709547  T
Q  342 tatcaaaatcctcaaacattatcacaactgccacaaaaacaacttacaccacctacaatctgctgctcccgcacaagccccgaacaacaacataaaaacc 441  Q
    || ||||||||||||||||   ||||||||||||||||||||||| ||||||| ||| |||||||||| | ||||| ||||||||| |||| |||||||     
T  39709546 taccaaaatcctcaaacatcgccacaactgccacaaaaacaactttcaccacccacattctgctgctcgcacacaacccccgaacaccaacttaaaaact 39709447  T
Q  442 tacacaa 448  Q
    |||||||    
T  39709446 tacacaa 39709440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 296 - 453
Target Start/End: Original strand, 34654467 - 34654624
Alignment:
Q  296 aacaaagctatcaccacgatcaacgaaacaacgtaaacaaaagttgtatcaaaatcctcaaacattatcacaactgccacaaaaacaacttacaccacct 395  Q
    |||||||||| || |||||||||||||||||| ||||||||||||||| ||||||||||||||||  || |||||| |||||||||||||| |||||||     
T  34654467 aacaaagctaacatcacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaactgtcacaaaaacaacttccaccaccc 34654566  T
Q  396 acaatctgctgctcccgcacaagccccgaacaacaacataaaaacctacacaacaact 453  Q
    ||| || ||||||| | ||||| ||| ||||| |||| ||||||||| ||||||||||    
T  34654567 acattccgctgctcgcacacaacccctgaacaccaacttaaaaacctccacaacaact 34654624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 230 - 452
Target Start/End: Original strand, 615207 - 615427
Alignment:
Q  230 aaaaatctataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaacgaaacaacgt 329  Q
    ||||| |||||||||| |||||||| ||||| | |||  |  |||||||| |||||||||||||| ||| |||||| || |||||||||| ||||||| |    
T  615207 aaaaaactataggaaatgcctcctagcaaagggttatatctgaaatcaattaatagaaacaccaa-aaccaagctaacagcacgatcaacaaaacaacat 615305  T
Q  330 aaacaaaagttgtatcaaaatcctcaaacattatcacaactgccacaaaaacaacttacaccacctacaatctgctgctcccgcacaagccccgaacaac 429  Q
    ||||| | | |||| |||||||||||||| |  |||||||  ||||||||||||||| |||| || | | || | ||||| | ||||| ||| ||||| |    
T  615306 aaacatatggtgtaccaaaatcctcaaacgtcgtcacaaca-ccacaaaaacaactttcaccgcccatattccgttgctcgcacacaacccctgaacacc 615404  T
Q  430 aacataaaaacctacacaacaac 452  Q
    ||| |||||||||||||||||||    
T  615405 aacttaaaaacctacacaacaac 615427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 230 - 337
Target Start/End: Original strand, 25791100 - 25791206
Alignment:
Q  230 aaaaatctataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaacgaaacaacgt 329  Q
    ||||| |||||||| | | ||||||||| || |||||| || ||||||||||||||||||| ||| |||||||||| |||||||||||| |||||||| |    
T  25791100 aaaaacctataggatatgtctcctaacatagggctatctccgaaatcaataaatagaaacatcaa-aacaaagctaacaccacgatcaatgaaacaacat 25791198  T
Q  330 aaacaaaa 337  Q
    ||||||||    
T  25791199 aaacaaaa 25791206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 285 - 452
Target Start/End: Original strand, 34117577 - 34117731
Alignment:
Q  285 gaaacaccaacaacaaagctatcaccacgatcaacgaaacaacgtaaacaaaagttgtatcaaaatcctcaaacattatcacaactgccacaaaaacaac 384  Q
    |||||||||| |||||||||| ||||||||||||||||||||| ||||||||            |||||||| |||  |  |||||||||||||||||||    
T  34117577 gaaacaccaa-aacaaagctaacaccacgatcaacgaaacaacataaacaaa------------atcctcaagcatcgttgcaactgccacaaaaacaac 34117663  T
Q  385 ttacaccacctacaatctgctgctcccgcacaagccccgaacaacaacataaaaacctacacaacaac 452  Q
    || ||||||| ||| || ||||||| | ||||| ||| ||||| |||| ||||||||||||| |||||    
T  34117664 ttccaccacccacattccgctgctcgcacacaacccctgaacaccaacttaaaaacctacaccacaac 34117731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 230 - 318
Target Start/End: Complemental strand, 11408443 - 11408355
Alignment:
Q  230 aaaaatctataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaa 318  Q
    |||||| ||||| |||| || ||||||||||||||||| || |||||||||||  |||||||||| |||||||||| |||||| |||||    
T  11408443 aaaaatttatagaaaacaccacctaacaaagagctatctccgaaatcaataaaaggaaacaccaaaaacaaagctaacaccacaatcaa 11408355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 370
Target Start/End: Complemental strand, 26237126 - 26237085
Alignment:
Q  329 taaacaaaagttgtatcaaaatcctcaaacattatcacaact 370  Q
    ||||||||||||||| ||||||| |||||||| |||||||||    
T  26237126 taaacaaaagttgtaccaaaatcttcaaacatcatcacaact 26237085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 5e-51; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 230 - 452
Target Start/End: Original strand, 17374779 - 17374999
Alignment:
Q  230 aaaaatctataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaacgaaacaacgt 329  Q
    ||||| |||||||||||||||||||| | || |||||| || ||||||||||||||||| | ||| |||||||||| ||||||||||||||||||||| |    
T  17374779 aaaaacctataggaaacgcctcctaagagagggctatctccgaaatcaataaatagaaaaatcaa-aacaaagctaacaccacgatcaacgaaacaacat 17374877  T
Q  330 aaacaaaagttgtatcaaaatcctcaaacattatcacaactgccacaaaaacaacttacaccacctacaatctgctgctcccgcacaagccccgaacaac 429  Q
    |||||||||||||| ||||||||||||||||  | |||||||||||||||| ||||| ||||||| ||| || ||||||| | ||||| ||| ||||| |    
T  17374878 aaacaaaagttgtaccaaaatcctcaaacatcgt-acaactgccacaaaaataacttccaccacccacattccgctgctcgcacacaacccctgaacacc 17374976  T
Q  430 aacataaaaacctacacaacaac 452  Q
    ||  ||||||||| |||||||||    
T  17374977 aaattaaaaacctccacaacaac 17374999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 230 - 427
Target Start/End: Complemental strand, 17282584 - 17282401
Alignment:
Q  230 aaaaatctataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaacgaaacaacgt 329  Q
    ||||| ||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||| || ||| ||| ||||||||||||||||||||| |    
T  17282584 aaaaacctataggaaacgcctcctaacaaagggctatctccgaaatcaataaatagaaacaccaa-aataaatctaacaccacgatcaacgaaacaacat 17282486  T
Q  330 aaacaaaagttgtatcaaaatcctcaaacattatcacaactgccacaaaaacaacttacaccacctacaatctgctgctcccgcacaagccccgaaca 427  Q
    |||            |||||||||||| |||  ||||||||||||||||||||||||  |||||| |||||||||||||| | ||||| ||| |||||    
T  17282485 aaa------------caaaatcctcaagcatcgtcacaactgccacaaaaacaacttctaccacc-acaatctgctgctcacacacaacccctgaaca 17282401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 230 - 452
Target Start/End: Complemental strand, 1552233 - 1552024
Alignment:
Q  230 aaaaatctataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaacgaaacaacgt 329  Q
    ||||||||||| ||||||||||||||||||| |||||| || ||||||||||||||||||||||| |||| ||||| ||||||||||||| ||||||| |    
T  1552233 aaaaatctataagaaacgcctcctaacaaagggctatctccgaaatcaataaatagaaacaccaa-aacatagctaacaccacgatcaacaaaacaacat 1552135  T
Q  330 aaacaaaagttgtatcaaaatcctcaaacattatcacaactgccacaaaaacaacttacaccacctacaatctgctgctcccgcacaagccccgaacaac 429  Q
    |||            |||||||||||| |||  ||||||||||||||||||||||||  |||||  ||| |||||||||| | ||||  ||  ||||| |    
T  1552134 aaa------------caaaatcctcaagcatcgtcacaactgccacaaaaacaacttctaccacacacattctgctgctcgcacacagcccttgaacacc 1552047  T
Q  430 aacataaaaacctacacaacaac 452  Q
    ||| | ||||||||||| |||||    
T  1552046 aacttgaaaacctacaccacaac 1552024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 230 - 452
Target Start/End: Original strand, 3921070 - 3921279
Alignment:
Q  230 aaaaatctataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaacgaaacaacgt 329  Q
    |||||||||||  |||||||||||||||||| |||||| || ||||||||||||||||||| ||| |||| ||||| ||||||||||||||||||||| |    
T  3921070 aaaaatctataataaacgcctcctaacaaagggctatctccgaaatcaataaatagaaacatcaa-aacatagctaacaccacgatcaacgaaacaacat 3921168  T
Q  330 aaacaaaagttgtatcaaaatcctcaaacattatcacaactgccacaaaaacaacttacaccacctacaatctgctgctcccgcacaagccccgaacaac 429  Q
    |||            |||||||||||| |||  ||||||||||||||||||||||||  |||||| ||| || ||||||| | ||||| ||  ||| | |    
T  3921169 aaa------------caaaatcctcaagcatcgtcacaactgccacaaaaacaacttctaccacccacattccgctgctcgcacacaatccttgaaaacc 3921256  T
Q  430 aacataaaaacctacacaacaac 452  Q
    ||| ||||||||||||| |||||    
T  3921257 aacttaaaaacctacaccacaac 3921279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 230 - 452
Target Start/End: Original strand, 4869095 - 4869314
Alignment:
Q  230 aaaaatctataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaacgaaacaacgt 329  Q
    ||||| ||||||||||||||||||| ||||| || ||| |  |||||||| |||||||||||||| ||| |||||| ||   |||||||||||||||| |    
T  4869095 aaaaacctataggaaacgcctcctagcaaagggccatctctgaaatcaattaatagaaacaccaa-aaccaagctaacagggcgatcaacgaaacaacat 4869193  T
Q  330 aaacaaaagttgtatcaaaatcctcaaacattatcacaactgccacaaaaacaacttacaccacctacaatctgctgctcccgcacaagccccgaacaac 429  Q
    ||||| | || ||| ||||||||||||||||  |||||||  ||||||||||||||| ||||||| | | || ||||||| | || || ||| ||||| |    
T  4869194 aaacatatgtggtaccaaaatcctcaaacatcgtcacaac-accacaaaaacaactttcaccacccatattccgctgctcgcacaaaacccctgaacacc 4869292  T
Q  430 aacataaaaacctacacaacaac 452  Q
    ||| |||||| ||||||||||||    
T  4869293 aacttaaaaa-ctacacaacaac 4869314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 237 - 452
Target Start/End: Original strand, 1894887 - 1895090
Alignment:
Q  237 tataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaacgaaacaacgtaaacaaa 336  Q
    ||||| ||||| |||||||||||||||||||  | ||||||||||||||||||| ||| |||||||||| ||||||| ||||||||||||| |||| |      
T  1894887 tatagaaaacgtctcctaacaaagagctatcttcgaaatcaataaatagaaacatcaa-aacaaagctaacaccacgttcaacgaaacaacataaaaa-- 1894983  T
Q  337 agttgtatcaaaatcctcaaacattatcacaactgccacaaaaacaacttacaccacctacaatctgctgctcccgcacaagccccgaacaacaacataa 436  Q
             ||||||||||| |||  ||||||||||||||||||||||||  |||||| ||| || | ||||| | ||||| | | ||||| |||| |||    
T  1894984 ---------aaaatcctcaagcatcgtcacaactgccacaaaaacaacttctaccacccacattccgttgctcacacacaacctctgaacaccaacttaa 1895074  T
Q  437 aaacctacacaacaac 452  Q
    |||||||||| |||||    
T  1895075 aaacctacaccacaac 1895090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 237 - 357
Target Start/End: Complemental strand, 11163687 - 11163571
Alignment:
Q  237 tataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaacgaaacaacgtaaacaaa 336  Q
    ||||| |||| ||||||||||||| |||||  |||||||||||||||||||| ||||| |||||||||| ||||   |||||||| ||||| ||||||||    
T  11163687 tatagaaaacacctcctaacaaagggctatatccaaaatcaataaatagaaataccaa-aacaaagctaacacc---atcaacgacacaacataaacaaa 11163592  T
Q  337 agttgtatcaaaatcctcaaa 357  Q
    |||||||  ||||||||||||    
T  11163591 agttgtacaaaaatcctcaaa 11163571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 300 - 452
Target Start/End: Original strand, 34659786 - 34659938
Alignment:
Q  300 aagctatcaccacgatcaacgaaacaacgtaaacaaaag-ttgtatcaaaatcctcaaacattatcacaactgccacaaaaacaacttacaccacctaca 398  Q
    |||||| || |||||||||||||||||| |||||| | | ||||| ||||||||||||||||  ||  |||  ||||||||||||||| ||||||| | |    
T  34659786 aagctaacaacacgatcaacgaaacaacataaacatatgtttgtaccaaaatcctcaaacatcgtctgaac-accacaaaaacaactttcaccacccata 34659884  T
Q  399 atctgctgctcccgcacaagccccgaacaacaacataaaaacctacacaacaac 452  Q
     || ||||||| | |||||  |  ||||| |||| |||||||||||||||||||    
T  34659885 ttccgctgctcgcacacaacgcttgaacatcaacttaaaaacctacacaacaac 34659938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 409
Target Start/End: Complemental strand, 3258066 - 3257990
Alignment:
Q  334 aaaagttgtatcaaaatcctcaaacattatcacaa-ctgccacaaaaacaacttacaccacctacaatctgctgctc 409  Q
    |||||||||||||||| | |||| ||  ||||||| |||||||||||||||||| ||||||||||| || |||||||    
T  3258066 aaaagttgtatcaaaaccatcaaccaacatcacaagctgccacaaaaacaacttccaccacctacattccgctgctc 3257990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 101; Significance: 7e-50; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 236 - 432
Target Start/End: Original strand, 250744 - 250939
Alignment:
Q  236 ctataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaacgaaacaacgtaaacaa 335  Q
    ||||||||||||||||||||||||| |||||| || |||||| ||||||||||||| || | |||||||| ||||||||||||||||||||| |||||||    
T  250744 ctataggaaacgcctcctaacaaagggctatctccgaaatcagtaaatagaaacac-aagaccaaagctaacaccacgatcaacgaaacaacataaacaa 250842  T
Q  336 aagttgtatcaaaatcctcaaacattatcacaactgccacaaaaacaacttacaccacctacaatctgctgctcccgcacaagccccgaacaacaac 432  Q
    |||||||| ||||||||||||||||  ||||||| |||||| ||||||||| ||||||| ||| || ||||||| | ||||| ||| ||||| ||||    
T  250843 aagttgtaccaaaatcctcaaacatagtcacaacagccacataaacaacttccaccaccaacattccgctgctcgcacacaacccctgaacaccaac 250939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 409
Target Start/End: Complemental strand, 47785 - 47745
Alignment:
Q  369 ctgccacaaaaacaacttacaccacctacaatctgctgctc 409  Q
    |||||||||||||||||| ||||||||||| || |||||||    
T  47785 ctgccacaaaaacaacttccaccacctacattccgctgctc 47745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 7e-50; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 236 - 432
Target Start/End: Complemental strand, 14566631 - 14566436
Alignment:
Q  236 ctataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaacgaaacaacgtaaacaa 335  Q
    ||||||||||||||||||||||||| |||||| || |||||| ||||||||||||| || | |||||||| ||||||||||||||||||||| |||||||    
T  14566631 ctataggaaacgcctcctaacaaagggctatctccgaaatcagtaaatagaaacac-aagaccaaagctaacaccacgatcaacgaaacaacataaacaa 14566533  T
Q  336 aagttgtatcaaaatcctcaaacattatcacaactgccacaaaaacaacttacaccacctacaatctgctgctcccgcacaagccccgaacaacaac 432  Q
    |||||||| ||||||||||||||||  ||||||| |||||| ||||||||| ||||||| ||| || ||||||| | ||||| ||| ||||| ||||    
T  14566532 aagttgtaccaaaatcctcaaacatagtcacaacagccacataaacaacttccaccaccaacattccgctgctcgcacacaacccctgaacaccaac 14566436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 231 - 453
Target Start/End: Complemental strand, 23054928 - 23054707
Alignment:
Q  231 aaaatctataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaacgaaacaacgta 330  Q
    |||| |||||| |||| |||||||||||||   |||| |||||| | |||||||||||||| || |||||||||| ||||||||||||||||||||| ||    
T  23054928 aaaacctatagaaaacacctcctaacaaaggattatctccaaaaactataaatagaaacactaa-aacaaagctaacaccacgatcaacgaaacaacata 23054830  T
Q  331 aacaaaagttgtatcaaaatcctcaaacattatcacaactgccacaaaaacaacttacaccacctacaatctgctgctcccgcacaagccccgaacaaca 430  Q
    ||||||||||||| |||||||||||||||||     |||||||||||||||||||| ||||||| ||| || | ||||| | ||||| ||| ||||| ||    
T  23054829 aacaaaagttgtaccaaaatcctcaaacattgctgaaactgccacaaaaacaacttccaccacccacattccggtgctcgcacacaaaccctgaacacca 23054730  T
Q  431 acataaaaacctacacaacaact 453  Q
    || ||||||||||||||||||||    
T  23054729 acttaaaaacctacacaacaact 23054707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 329 - 452
Target Start/End: Original strand, 6409578 - 6409701
Alignment:
Q  329 taaacaaaagttgtatcaaaatcctcaaacattatcacaactgccacaaaaacaacttacaccacctacaatctgctgctcccgcacaagccccgaacaa 428  Q
    ||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||| ||||||||||| || |||||||   || || ||||||||||    
T  6409578 taaacaaaagttgcaccaaaatcctcaaacatcatcacaactgccacaaaaacaacttccaccacctacattccgctgctcgatcataacccccgaacaa 6409677  T
Q  429 caacataaaaacctacacaacaac 452  Q
    ||||||||||||||||| ||||||    
T  6409678 caacataaaaacctacataacaac 6409701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 230 - 450
Target Start/End: Complemental strand, 34227639 - 34227432
Alignment:
Q  230 aaaaatctataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaacgaaacaacgt 329  Q
    ||||| ||||||||| | |||| |||||||| |||||| || ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |    
T  34227639 aaaaacctataggaatcacctcttaacaaagggctatctccgaaatcaataaatagaaacaccaa-aacaaagctaacaccacgatcaacgaaacaacat 34227541  T
Q  330 aaacaaaagttgtatcaaaatcctcaaacattatcacaactgccacaaaaacaacttacaccacctacaatctgctgctcccgcacaagccccgaacaac 429  Q
    |||            |||||||||||| |||  ||||||||||||||||||||||||  |||||| ||| | |||| ||| | ||||| ||| ||||| |    
T  34227540 aaa------------caaaatcctcaagcatcgtcacaactgccacaaaaacaacttctaccacccacattttgctactcgcacacaacccctgaacacc 34227453  T
Q  430 aacataaaaacctacacaaca 450  Q
    ||| |||||||||||||||||    
T  34227452 aacttaaaaacctacacaaca 34227432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 230 - 452
Target Start/End: Original strand, 53201728 - 53201939
Alignment:
Q  230 aaaaatctataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaacgaaacaacgt 329  Q
    ||||| ||||||||||| ||||||||||||| |||||| || ||||||||||||||||||||||| |||||||||| || |||||||||| ||||||| |    
T  53201728 aaaaacctataggaaacacctcctaacaaagggctatctccgaaatcaataaatagaaacaccaa-aacaaagctaacatcacgatcaacaaaacaacat 53201826  T
Q  330 aaacaaaagttgtatcaaaatcctcaaacattatcacaactgccacaaaaacaact--tacaccacctacaatctgctgctcccgcacaagccccgaaca 427  Q
    |||            |||||||||||| |||  |||||||||||||||||||||||  |||  |||| ||| || ||||||| | ||||| ||| |||||    
T  53201827 aaa------------caaaatcctcaagcatcgtcacaactgccacaaaaacaacttctaccacacccacattccgctgctcgcacacaacccctgaaca 53201914  T
Q  428 acaacataaaaacctacacaacaac 452  Q
     |||| ||||||||||||| |||||    
T  53201915 tcaacttaaaaacctacaccacaac 53201939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 230 - 325
Target Start/End: Complemental strand, 47519094 - 47519000
Alignment:
Q  230 aaaaatctataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaacgaaaca 325  Q
    ||||| |||| ||||| |||||||||||||| |||||| || |||||||||||| |||||||||| |||||||||| ||||| |||||||||||||    
T  47519094 aaaaacctattggaaatgcctcctaacaaagggctatctccgaaatcaataaatcgaaacaccaa-aacaaagctaacaccaggatcaacgaaaca 47519000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 231 - 452
Target Start/End: Complemental strand, 24958248 - 24958026
Alignment:
Q  231 aaaatctataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaa------------ 318  Q
    ||||||||||| |||| || ||||||||||||||||| ||||||||||||||  |||||||||| |||||||||| |||||| |||||                
T  24958248 aaaatctatagaaaacaccacctaacaaagagctatctccaaaatcaataaa-ggaaacaccaaaaacaaagctaacaccacaatcaaatacaaacctcc 24958150  T
Q  319 -cgaaacaacgtaaacaaaagttgtatcaaaatcctcaaacattatcacaactgccacaaaaacaacttacaccacctacaatctgctgctcccgcacaa 417  Q
     |  || ||| ||||||||||||||| |||||||||||           ||| |||||||||||||||| ||||||||||| | || ||||| | |||||    
T  24958149 gcacaataacataaacaaaagttgtaccaaaatcctca-----------aacggccacaaaaacaacttccaccacctacattatgttgctcgctcacaa 24958061  T
Q  418 gccccgaacaacaacataaaaacctacacaacaac 452  Q
     ||| ||||||||||||||||| ||| ||||||||    
T  24958060 cccctgaacaacaacataaaaatctaaacaacaac 24958026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 230 - 337
Target Start/End: Complemental strand, 31360708 - 31360602
Alignment:
Q  230 aaaaatctataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaacgaaacaacgt 329  Q
    ||||| |||||  ||||| |||||||||||  |||||  ||||||||||||||||||||||| || |||||| ||| || |||||||||||| ||||| |    
T  31360708 aaaaacctataaaaaacgtctcctaacaaaatgctatttccaaaatcaataaatagaaacactaa-aacaaaactaacatcacgatcaacgacacaacat 31360610  T
Q  330 aaacaaaa 337  Q
    ||||||||    
T  31360609 aaacaaaa 31360602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 452
Target Start/End: Complemental strand, 47518976 - 47518888
Alignment:
Q  364 cacaactgccacaaaaacaacttacaccacctacaatctgctgctcccgcacaagccccgaacaacaacataaaaacctacacaacaac 452  Q
    |||||||||||||||||||||||  |||||| ||| |||||||||| | |||||  || ||||  |||| ||||||||||||| |||||    
T  47518976 cacaactgccacaaaaacaacttctaccacccacattctgctgctcgcacacaactcctgaacgccaacttaaaaacctacaccacaac 47518888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 439
Target Start/End: Original strand, 19657909 - 19658019
Alignment:
Q  329 taaacaaaagttgtatcaaaatcctcaaacattatcacaa-ctgccacaaaaacaacttacaccacctacaatctgctgctcccgcacaagccccgaaca 427  Q
    |||| |||||||||| |||| ||||||||||| ||||||| |||||||||||||||||| || ||  |||| || ||||||| | ||||| |||| ||||    
T  19657909 taaagaaaagttgtaccaaattcctcaaacatcatcacaagctgccacaaaaacaacttcca-caattacattccgctgctcgcacacaacccccaaaca 19658007  T
Q  428 acaacataaaaa 439  Q
      ||||||||||    
T  19658008 gtaacataaaaa 19658019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 452
Target Start/End: Original strand, 23533066 - 23533143
Alignment:
Q  376 aaaaacaacttacaccacctacaatctgctgctcccgcacaagccccgaacaacaacat-aaaaacctacacaacaac 452  Q
    ||||||||||| ||||||||||||| |||||||| | ||||| | || ||||||||| | || |||| ||||||||||    
T  23533066 aaaaacaacttccaccacctacaatatgctgctcgcacacaaccaccaaacaacaacgtcaagaaccaacacaacaac 23533143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 409
Target Start/End: Original strand, 14791946 - 14791986
Alignment:
Q  369 ctgccacaaaaacaacttacaccacctacaatctgctgctc 409  Q
    |||||||||||||||||| ||||||||||| || |||||||    
T  14791946 ctgccacaaaaacaacttccaccacctacattccgctgctc 14791986  T

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Target: chr3 (Bit Score: 101; Significance: 7e-50; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 230 - 394
Target Start/End: Original strand, 43275415 - 43275578
Alignment:
Q  230 aaaaatctataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaacgaaacaacgt 329  Q
    ||||| |||||| |||||  ||||||||||| |||||| || ||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||| |    
T  43275415 aaaaacctatagaaaacgtgtcctaacaaagggctatctccgaaatcaataaatagaaacatcaa-aacaaagctaacaccacgatcaacgaaacaacat 43275513  T
Q  330 aaacaaaagttgtatcaaaatcctcaaacattatcacaactgccacaaaaacaacttacaccacc 394  Q
    |||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||| |||||||    
T  43275514 aaacaaaagttgtaccaaaatcctcaaacattgtcacaagtgccacaaaaacaacttccaccacc 43275578  T

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Target: chr3; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 230 - 452
Target Start/End: Complemental strand, 18270368 - 18270148
Alignment:
Q  230 aaaaatctataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaacgaaacaacgt 329  Q
    ||||| ||||||||||||||||||| |||||||||||| |  |||||||| |||||||||||||| ||| |||||| || |||||||||||||||||| |    
T  18270368 aaaaacctataggaaacgcctcctagcaaagagctatctctgaaatcaattaatagaaacaccaa-aaccaagctaacagcacgatcaacgaaacaacat 18270270  T
Q  330 aaacaaaagttgtatcaaaatcctcaaacattatcacaactgccacaaaaacaacttacaccacctacaatctgctgctcccgcacaagccccgaacaac 429  Q
    ||||  | |||||| ||||||||||||||||  |||||||  ||||||||| ||||| ||||||| | | || ||||||| | ||||| ||| ||||| |    
T  18270269 aaacttatgttgtaccaaaatcctcaaacatcgtcacaac-accacaaaaataactttcaccacccatattccgctgctcgcacacaacccctgaacacc 18270171  T
Q  430 aacataaaaacctacacaacaac 452  Q
    ||| |||||||||||||||||||    
T  18270170 aacttaaaaacctacacaacaac 18270148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 237 - 409
Target Start/End: Complemental strand, 893590 - 893419
Alignment:
Q  237 tataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaacgaaacaacgtaaacaaa 336  Q
    |||||||||||||||||||||||| |||||| |  ||||||||||||||||||||||| |||||||||| |||||||||||| |||| ||| |||| |||    
T  893590 tataggaaacgcctcctaacaaagggctatctctgaaatcaataaatagaaacaccaa-aacaaagctaacaccacgatcaatgaaaaaacataaataaa 893492  T
Q  337 agttgtatcaaaatcctcaaacattatcacaactgccacaaaaacaacttacaccacctacaatctgctgctc 409  Q
    ||||||| ||||||| | ||||||  ||||||||||||  |||||||||| ||||||| ||| || |||||||    
T  893491 agttgtaccaaaatctttaaacatcgtcacaactgccatcaaaacaacttccaccacccacattccgctgctc 893419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 237 - 319
Target Start/End: Complemental strand, 3364139 - 3364057
Alignment:
Q  237 tataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaac 319  Q
    |||| |||||||||| | ||||||||||||| |||||||||||||||| |||||| || |||||| |||||||||| ||||||    
T  3364139 tataagaaacgcctcattacaaagagctatctccaaaatcaataaataaaaacactaaaaacaaaactatcaccaccatcaac 3364057  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 369 - 452
Target Start/End: Original strand, 25498548 - 25498632
Alignment:
Q  369 ctgccacaaaaacaacttacaccacctacaatctgctgctcccgcacaagccccgaacaacaacat-aaaaacctacacaacaac 452  Q
    |||||||||||||||||| ||||||||||| |||||||||| | ||||| |||| ||||||||| | || |||| ||||||||||    
T  25498548 ctgccacaaaaacaacttccaccacctacattctgctgctcgcacacaacccccaaacaacaacgtcaagaaccaacacaacaac 25498632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 300 - 394
Target Start/End: Complemental strand, 3576901 - 3576808
Alignment:
Q  300 aagctatcaccacgatcaacgaaacaacgtaaacaaaagttgtatcaaaatcctcaaacattatcacaactgccacaaaaacaacttacaccacc 394  Q
    |||||| || |||||||||||||||||| |||||| | ||||||  ||||||||||||| |  |||||||  ||||||||||||||| |||||||    
T  3576901 aagctaacagcacgatcaacgaaacaacataaacatatgttgtactaaaatcctcaaacgtcgtcacaac-accacaaaaacaactttcaccacc 3576808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 392
Target Start/End: Original strand, 14993528 - 14993599
Alignment:
Q  322 aacaacgtaaacaaaagttgtatcaaaatcctcaaacattatcacaa-ctgccacaaaaacaacttacacca 392  Q
    |||||| ||||||||||||||| ||||  |||||||||| ||||||| | | |||||||||||||| |||||    
T  14993528 aacaacataaacaaaagttgtaccaaatccctcaaacatcatcacaagccgtcacaaaaacaacttccacca 14993599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 1e-45; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 307 - 452
Target Start/End: Original strand, 5994151 - 5994296
Alignment:
Q  307 caccacgatcaacgaaacaacgtaaacaaaagttgtatcaaaatcctcaaacattatcacaactgccacaaaaacaacttacaccacctacaatctgctg 406  Q
    ||||||||||||||||||||| |||||||||| |||| ||||||||||||||||  |||||||| ||||||||||||||| ||||||||| | |||||||    
T  5994151 caccacgatcaacgaaacaacataaacaaaagatgtaccaaaatcctcaaacatcgtcacaactaccacaaaaacaacttccaccacctagattctgctg 5994250  T
Q  407 ctcccgcacaagccccgaacaacaacataaaaacctacacaacaac 452  Q
    ||| ||||||| ||||| ||||||| ||||||||||||||||||||    
T  5994251 ctcgcgcacaatccccggacaacaatataaaaacctacacaacaac 5994296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 230 - 448
Target Start/End: Original strand, 10408290 - 10408507
Alignment:
Q  230 aaaaatctataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaacgaaacaacgt 329  Q
    ||||| ||||||||||| ||||||||||||| | |||| || ||||||||||||||||||||||| || |||| || || ||| |||||| ||||||| |    
T  10408290 aaaaacctataggaaacacctcctaacaaagggttatctccgaaatcaataaatagaaacaccaa-aataaagttaacatcacaatcaactaaacaacat 10408388  T
Q  330 aaacaaaagttgtatcaaaatcctcaaacattatcacaactgccacaaaaacaacttacaccacctacaatctgctgctcccgcacaagccccgaacaac 429  Q
    |||||||||||||| | |||| |||||||||  || ||||||||||||||||||||| |||| |||||| || ||||||| | ||||| | | ||||| |    
T  10408389 aaacaaaagttgtaccgaaattctcaaacatcgtcgcaactgccacaaaaacaacttccaccgcctacattccgctgctcgcacacaacctctgaacacc 10408488  T
Q  430 aacataaaaacctacacaa 448  Q
    ||| |||||||||||||||    
T  10408489 aacttaaaaacctacacaa 10408507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 236 - 452
Target Start/End: Original strand, 20860767 - 20860989
Alignment:
Q  236 ctataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaacgaaacaacgtaaacaa 335  Q
    |||||||||||||||||||| |||| |||||| || ||| ||||||||||||||||||| |||||||||| |||| | |||||||||||||| |||||||    
T  20860767 ctataggaaacgcctcctaaaaaagggctatctccgaaaccaataaatagaaacaccaa-aacaaagctaacaccgcaatcaacgaaacaacataaacaa 20860865  T
Q  336 aagttgtatcaaaatcctcaaacattatcacaactgccac-------aaaaacaacttacaccacctacaatctgctgctcccgcacaagccccgaacaa 428  Q
    |||||||| |||| ||||||||||   |||||||||||||       ||||| ||||| ||||| | ||| |  ||||||| | ||||| ||| |||||     
T  20860866 aagttgtaccaaagtcctcaaacaaggtcacaactgccacacaaaaaaaaaaaaacttccaccaaccacatttcgctgctctcacacaacccctgaacac 20860965  T
Q  429 caacataaaaacctacacaacaac 452  Q
    |||| |||||||||| ||||||||    
T  20860966 caacttaaaaacctatacaacaac 20860989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 334 - 451
Target Start/End: Original strand, 6443585 - 6443702
Alignment:
Q  334 aaaagttgtatcaaaatcctcaaacattatcacaactgccacaaaaacaacttacaccacctacaatctgctgctcccgcacaagccccgaacaacaaca 433  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||| |||| | || ||||  | ||||| || ||||||||||||    
T  6443585 aaaagttgtaccaaaatcctcaaacatcatcacaactgccacaaaaacaacttccaccacgtacattttgttgcttgctcacaaccctcgaacaacaaca 6443684  T
Q  434 taaaaacctacacaacaa 451  Q
    ||||||||||||||||||    
T  6443685 taaaaacctacacaacaa 6443702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 230 - 289
Target Start/End: Original strand, 5994089 - 5994148
Alignment:
Q  230 aaaaatctataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaac 289  Q
    ||||| |||||||||||||||||||||||||||||||   | ||||||||| ||||||||    
T  5994089 aaaaacctataggaaacgcctcctaacaaagagctatattcgaaatcaatagatagaaac 5994148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 318
Target Start/End: Original strand, 6443498 - 6443560
Alignment:
Q  256 caaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaa 318  Q
    ||||| |||||| | ||||||||||||  |||||||||| |||||||||| |||||| |||||    
T  6443498 caaagggctatctctaaaatcaataaaaggaaacaccaaaaacaaagctaacaccacaatcaa 6443560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 379
Target Start/End: Complemental strand, 13995332 - 13995274
Alignment:
Q  322 aacaacgtaaacaaaagttgtatcaaaatcctcaaacattatcacaa-ctgccacaaaa 379  Q
    |||||| ||||||||||||||| ||||  ||||||||||| |||||| |||||||||||    
T  13995332 aacaacataaacaaaagttgtaccaaatccctcaaacattctcacaagctgccacaaaa 13995274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 230 - 398
Target Start/End: Original strand, 53927 - 54094
Alignment:
Q  230 aaaaatctataggaaacgcctcctaacaaagagctatccccaaaatcaataaatagaaacaccaacaacaaagctatcaccacgatcaacgaaacaacgt 329  Q
    ||||| ||| |||||||  |||||||||||| | |||| ||||||||||||||  |||||||||| |||||||||  |||||  ||||| || | ||| |    
T  53927 aaaaacctacaggaaacatctcctaacaaagggatatctccaaaatcaataaaaggaaacaccaaaaacaaagctgacaccaaaatcaaagaca-aacat 54025  T
Q  330 aaacaaaagttgtatcaaaatcctcaaacattatcacaa-ctgccacaaaaacaacttacaccacctaca 398  Q
       | ||||||||| ||||| |||||||||| ||||||| ||| || ||||||||||| |||||||||||    
T  54026 cctc-aaagttgtaccaaaaccctcaaacatcatcacaagctgacagaaaaacaacttccaccacctaca 54094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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