View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11025_low_5 (Length: 451)
Name: NF11025_low_5
Description: NF11025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11025_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 417; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 42577412 - 42577848
Alignment:
| Q |
1 |
atatcattgagcgatacggaaagtactttaaaactcttcctacaggcgtccattttttgatcccttttgttgataaaattgcttgtgtccataagctatg |
100 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42577412 |
atatcattgagcgatatggaaagtactttaaaactcttcctaccggcgtccattttttgatcccttttgttgataaaattgcttgcgtccataagctatg |
42577511 |
T |
|
| Q |
101 |
gatagaaactcttaaacttaatagccagagtgctttcaccaacgataacattggcatgttcgtagatggtctgattgatgttaaggtctatcgatttttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42577512 |
gatagaaactcttaaacttaatagccagagtgctttcaccaacgataacattggcatgttcgtagatggtcggattgatgttaaggtctatcgatttttg |
42577611 |
T |
|
| Q |
201 |
tctctgatttcggttaatactttttaggtgcttcttgatttgttttgtaactgtttttgttggagtgcagattgtggatcctaagcttgcttcctatgga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42577612 |
tctctgatttcggttaatactttttaggtgcttcttgatttgttttgtaactgtttttgttggagtgcagattgtggatcctaagcttgcttcctatgga |
42577711 |
T |
|
| Q |
301 |
actgaggataatcccctttatgctatccatgagctggctcaagccacaatccgtggtgaaatccgtaaaattactttagatgatttcaacaaggaaaaga |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42577712 |
actgaggataatcccctttatgctatccatgagctggctcaagccacaatccgtgttgaaatccgtaaaattactttagatgatttcaacaaggaaaaga |
42577811 |
T |
|
| Q |
401 |
acgatacactgcctaaaaagattatggtgagtttagt |
437 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
42577812 |
acgatacactgcctaaaaagattatggtgagtttagt |
42577848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 42570223 - 42570662
Alignment:
| Q |
1 |
atatcattgagcgatacggaaagtactttaaaactcttcctacaggcgtccattttttgatcccttttgttgataaaattgcttgtgtccataagctatg |
100 |
Q |
| |
|
||||||| ||| |||| ||||| ||||||||| |||||||||| ||| |||||||||||| |||||||||||||||||||||| | |||||| | |||| |
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|
| T |
42570223 |
atatcatcgagagatatggaaaatactttaaatctcttcctaccggcatccattttttgaacccttttgttgataaaattgctcgcgtccatgatctata |
42570322 |
T |
|
| Q |
101 |
gatagaaactct-taaacttaatagccagagtgctttcaccaacgataacattggcatgttcgtagatggtctgattgatgttaaggtctatcga--ttt |
197 |
Q |
| |
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|| | |||| || || ||| || ||| | |||||||||||| |||||||| |||||||||| | |||| |||||||||||||| |||||| ||| |
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| T |
42570323 |
gaaaaaaaccctctattcttgatcgcctgcctgctttcaccaaggataacatcagcatgttcgtgggtggttgcattgatgttaaggtgtatcgaatttt |
42570422 |
T |
|
| Q |
198 |
ttgtctctgatttcggttaatactttttaggtgcttcttgatttgttttgtaactgtttttgttggagtgcagattgtggatcctaagcttgcttcctat |
297 |
Q |
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|| ||||| ||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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|
| T |
42570423 |
ttatctctaattccagttaatactttttaggtgcttgttgatttgttttgtaactgtttttgttggagtgcagattgtggatcctaggcttgcttcttat |
42570522 |
T |
|
| Q |
298 |
ggaactgaggataatcccctttatgctatccatgagctggctcaagccacaatccgtggtgaaatccgtaaaattactttagatgatttcaacaaggaaa |
397 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42570523 |
ggaactgaggataatcccatttatgctgcccatgagctggctctatccacaatccgaagtgaaatccgtaaaattactttagatgatttcaacaaggaaa |
42570622 |
T |
|
| Q |
398 |
agaacgatacactgcctaaaaagattatggtgagtttagt |
437 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||| |
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|
| T |
42570623 |
agaacgatacactgcctaagaaaattatggtgagtttagt |
42570662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 239 - 365
Target Start/End: Original strand, 42572833 - 42572959
Alignment:
| Q |
239 |
tttgttttgtaactgtttttgttggagtgcagattgtggatcctaagcttgcttcctatggaactgaggataatcccctttatgctatccatgagctggc |
338 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||| | | ||||||||||||| || | || |||| |
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| T |
42572833 |
tttgtttagtaactgtttttactggagtgcagattgtggatcctaagcttgcttcttatggagttgaagggagtcccctttatgctgtcagtcaggtggc |
42572932 |
T |
|
| Q |
339 |
tcaagccacaatccgtggtgaaatccg |
365 |
Q |
| |
|
| || ||||||||||| ||||| |||| |
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|
| T |
42572933 |
taaaaccacaatccgtagtgaactccg |
42572959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 42594104 - 42594206
Alignment:
| Q |
7 |
ttgagcgatacggaaagtactttaaaactcttcctacaggcgtccattttttgatcccttttgttgataaaattgcttgtgtccataagctatggataga |
106 |
Q |
| |
|
||||| ||| |||||| ||||| || ||||| |||||||||||||||||||||| |||||||| ||| || ||| | | ||||||||| |||||||||| |
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| T |
42594104 |
ttgagagattcggaaaatacttcaagactctacctacaggcgtccattttttgaatccttttgtcgatgaagttgttcgcgtccataagatatggataga |
42594203 |
T |
|
| Q |
107 |
aac |
109 |
Q |
| |
|
||| |
|
|
| T |
42594204 |
aac |
42594206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 437
Target Start/End: Original strand, 42594366 - 42594537
Alignment:
| Q |
265 |
gtgcagattgtggatcctaagcttgcttcctatggaactgaggataatcccctttatgctatccatgagctggctcaagccacaatccgtggtgaaatcc |
364 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| | || | || | ||||||| |||| ||||||| |||||| || || ||| || ||||||||| |
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| T |
42594366 |
gtgcagattgtggatcctaagcttgcttcttatgtagctca-gaaagtccccttagtgctgtccatgaactggctgaaatcagtatctgtagtgaaatcc |
42594464 |
T |
|
| Q |
365 |
gtaaaattactttagatgatttcaacaaggaaaagaacgatacactgcctaaaaagattatggtgagtttagt |
437 |
Q |
| |
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| ||||||||||| || | ||||| || |||||| | ||| ||||||||||| || ||||||||||||| |
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|
| T |
42594465 |
gcaaaattactttggaaaacttcaataatgaaaaggagaatattctgcctaaaaacgttgtggtgagtttagt |
42594537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 42572579 - 42572618
Alignment:
| Q |
1 |
atatcattgagcgatacggaaagtactttaaaactcttcc |
40 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||| |
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|
| T |
42572579 |
atatcattgagcgatatggaaaatactttaaaactcttcc |
42572618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 42607344 - 42607422
Alignment:
| Q |
6 |
attgagcgatacggaaagtactttaaaactcttcctacaggcgtccattttttgatcccttttgttgataaaattgctt |
84 |
Q |
| |
|
|||||||||| ||||| ||| |||| ||||||||| | || ||||||||||| ||||| ||||||||| |||||||| |
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|
| T |
42607344 |
attgagcgatttggaaaatacgttaagactcttccttctggaatccattttttggtccctcttgttgatagaattgctt |
42607422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 342
Target Start/End: Complemental strand, 27871125 - 27871041
Alignment:
| Q |
255 |
ttttgttggagtgcagattgtggatcctaagcttgcttcctatggaactgaggataatcccctttatgctatccatgagctggctcaa |
342 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||| ||||| |||| ||||||||||||||| || | ||||||||||| |
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|
| T |
27871125 |
tttttttggagtgcagattgtggatcctaaacttgcttcttatggggttgag---aatcccctttatgctgtcattcagctggctcaa |
27871041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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