View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11025_low_6 (Length: 411)
Name: NF11025_low_6
Description: NF11025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11025_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 43984690 - 43984285
Alignment:
| Q |
1 |
aacaaagtttagttcctttgaatgcatgtgtaatgtgttcaagatggtgttgagactatttaaaaataggatttatacaaaagcgaatttatttaaaaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43984690 |
aacaaagtttagttcctttgaatgcatgtgtaatgtgttcaagatgatgttgagactatttaaaaataggatttatacaaaagcgaatttatttaaaaga |
43984591 |
T |
|
| Q |
101 |
ggagtgttaaattatgttccaattctatgtggaaatggtgtggcattgattgaacatctaagtatcgtatagaattctaagttggttggaagtttctgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43984590 |
ggagtgttaaattatgttccaattctatgtggaaatggtgtggcattgattgaacatctaagtatcgtatagaattctaagttggttgcaagtttctgat |
43984491 |
T |
|
| Q |
201 |
cattgggaaaactcaattgagttcatttggtaaaactctgttgcatatattgtagcagtactatcatgcatgtgtatacttgtgtgctaatcaagtgttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43984490 |
cattgggaaaactcaattgagttcatttggtaaaactctgttgcatatattgtaacagtactatcatgcatgtgtatacttgtgtgctaatcaagtgttt |
43984391 |
T |
|
| Q |
301 |
ggagctaattagcatgactcacaagtattgtaagttaagccatacttcatagtttattatagctctcggtgcnnnnnnnnttactaattttggtcatttc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43984390 |
ggagctaattagcatgactcacaagtattgtaagttaagccatacttcatagtttattatagctctcggtgcaaaaaaaattactaattttggtcatttc |
43984291 |
T |
|
| Q |
401 |
tctgct |
406 |
Q |
| |
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| |||| |
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|
| T |
43984290 |
tttgct |
43984285 |
T |
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