View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11025_low_9 (Length: 357)
Name: NF11025_low_9
Description: NF11025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11025_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 347
Target Start/End: Original strand, 32284704 - 32285033
Alignment:
| Q |
18 |
gaagtgggattcggagaggccttgtcaacaagacgacattgtgaagaaaaataaactgacttcacaaaaatcaatagtatgagaagctccggttggagga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
32284704 |
gaagtgggattcggagaggccttgtcaacaagatgacattgtgaagaaaaataaactgacttcacaaaaatcaagagtatgagaagctccggttggagga |
32284803 |
T |
|
| Q |
118 |
acaaaacaacctagagaaaaggtatactctcagaaaatacattttacttttcaagaattgctttccttactagagcttatatattgaactaaaagtgaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32284804 |
acaaaacaacctagagaaaaggtatactctcagaaaatacattttacttttcaagaattgctttccttactagagcttatatattgaactaaaagtgaaa |
32284903 |
T |
|
| Q |
218 |
acaatggggacaattacatacctgtacacaacaagacacctaacccagaacactgaaggcatctcattgttccgtccttgttcttgcccctatcaactct |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32284904 |
acaatggggacaattacatacctgtacacaacaagacacctaacccagaacactgaaggcatctcattgttccgtccttgttcttgcccctatcaactct |
32285003 |
T |
|
| Q |
318 |
aaccttcgtcgaaagtcttgatggttcttc |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
32285004 |
aaccttcgtcgaaagtcttgatggttcttc |
32285033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University