View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11026_high_2 (Length: 374)
Name: NF11026_high_2
Description: NF11026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11026_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 8 - 358
Target Start/End: Original strand, 26914737 - 26915090
Alignment:
| Q |
8 |
aagcagagatgtcaatatgatgatcaaagccaagaatgagaatggattatgggataatacatttcatgaatagagaaacttacacatcatattacaaaac |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26914737 |
aagcaaagatgtcaatatgatgatcaaagccaagaatgagaatggattatgggataatacatttcatgaatagagaaacttacacatcatattacaaaac |
26914836 |
T |
|
| Q |
108 |
tttccaaaagtttttggtatcctgccttgtggatcaactttaataagaattccttcatcggttcggatgaatacagcgcttactctaccagacaagcaaa |
207 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26914837 |
tttccaaaagtttctggtatcctgccttgtggatcaactttaataagaattccttcatcggttcggatgaatacagcgcttactctaccagacaagcaaa |
26914936 |
T |
|
| Q |
208 |
gaggactacccattattgcaaggagagcctaaatttcatatacattcagagtcaggtacatcaagaaaacgag---ataatctttcaaacttttttggga |
304 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26914937 |
gaggactatccattattgcaaggagagcctaaattccatatacattcagagtcaggtacatcaagaaaacgagataataatctttcaaacttttttggga |
26915036 |
T |
|
| Q |
305 |
tatgttacacaacacttttctaagaaaactacaatggaacataaaacagaatat |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26915037 |
tatgttacacaacacttttctaagaaaactacaatggaacataaaacagaatat |
26915090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 151; Significance: 8e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 86 - 358
Target Start/End: Original strand, 51182552 - 51182825
Alignment:
| Q |
86 |
cttacacatcatattacaaaactttccaaaagtttttggtatcctgccttgtggatcaactttaataagaattccttcatcggttcggatgaatacagcg |
185 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||| |||| |
|
|
| T |
51182552 |
cttacccatcatattacaaaaatttccaaaagtttttggtatcctggtttgtggatcaactttaataagaattccttcaccggttctgatgaatatagcg |
51182651 |
T |
|
| Q |
186 |
cttactctaccagacaagcaaagaggactacccattattgcaaggagagcctaaatttcatatacattcagagtcaggtacatcaagaaaacgag---at |
282 |
Q |
| |
|
||||||||||||| ||||||||| | ||||| || |||||||||||||||||||| | |||||||||||||||| |||||||||||||||| ||| || |
|
|
| T |
51182652 |
cttactctaccagccaagcaaagtgcactactcaatattgcaaggagagcctaaaatccatatacattcagagttaggtacatcaagaaaatgagataat |
51182751 |
T |
|
| Q |
283 |
aatctttcaaacttttttgggatatgttacacaacacttttctaagaaaactacaatggaacataaaacagaatat |
358 |
Q |
| |
|
|||||||||||||||| ||| | | | | || ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
51182752 |
aatctttcaaacttttcagggttttat--aataatacttttctaagaaaactacaatggaacataaaacaaaatat |
51182825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 51182481 - 51182519
Alignment:
| Q |
8 |
aagcagagatgtcaatatgatgatcaaagccaagaatga |
46 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
51182481 |
aagcaaagatgtcaatatgatgatcaaagccaagaatga |
51182519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University