View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11026_high_3 (Length: 314)

Name: NF11026_high_3
Description: NF11026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11026_high_3
NF11026_high_3
[»] chr2 (1 HSPs)
chr2 (1-295)||(11733966-11734260)
[»] chr3 (1 HSPs)
chr3 (172-287)||(53148129-53148244)
[»] chr4 (4 HSPs)
chr4 (173-285)||(5530712-5530824)
chr4 (173-285)||(5922978-5923090)
chr4 (173-285)||(5936387-5936499)
chr4 (173-295)||(38178777-38178899)
[»] chr8 (2 HSPs)
chr8 (173-281)||(40919556-40919664)
chr8 (172-290)||(45319388-45319506)
[»] chr7 (1 HSPs)
chr7 (184-295)||(34839842-34839953)
[»] chr1 (1 HSPs)
chr1 (184-290)||(45454432-45454538)


Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 11733966 - 11734260
Alignment:
Q  1 caacacaaattcaacatcactaaaaactaaaaaggaaaataatgaagctgccgacaaactcacaacataaaacgacacaatcgcaattctctaacaacac 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11733966 caacacaaattcaacatcactgaaaactaaaaaggaaaataatgaagctgccgacaaactcacaacataaaacgacacaatcgcaattctctaacaacac 11734065  T
Q  101 aactgcaattatctcaaaacaatacatattcaacatggctaaaaacaaaaaggatgaatttataaccaaacttaccttgcaagcaatcacaattctcagc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11734066 aactgcaattatctcaaaacaatacatattcaacatggctaaaaacaaaaaggatgaatttataaccaaacttaccttgcaagcaatcacaattctcagc 11734165  T
Q  201 ttctttacgaacaacatcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaattattcccagcaccagactgaccga 295  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11734166 ttctttacgaacaacatcaagaacagaatcaataagctcagcgccttcggtataatgacctttagcccaattattcccagcaccagactgaccga 11734260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 172 - 287
Target Start/End: Original strand, 53148129 - 53148244
Alignment:
Q  172 ttaccttgcaagcaatcacaattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaat 271  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||| |||||||    
T  53148129 ttaccttgcaagcaatcacaattctctgcttctttacgaacaacatcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaat 53148228  T
Q  272 tattcccagcaccaga 287  Q
    |||| |||||||||||    
T  53148229 tattaccagcaccaga 53148244  T

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Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 173 - 285
Target Start/End: Complemental strand, 5530824 - 5530712
Alignment:
Q  173 taccttgcaagcaatcacaattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaatt 272  Q
    |||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||    
T  5530824 taccctgcaagcaatcacaattctcagcttctttcctaacaacatcaagaacagaatcaataagctcagcgccttcagtataatgccctttagcccagtt 5530725  T
Q  273 attcccagcacca 285  Q
    |||||||||||||    
T  5530724 attcccagcacca 5530712  T

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Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 173 - 285
Target Start/End: Original strand, 5922978 - 5923090
Alignment:
Q  173 taccttgcaagcaatcacaattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaatt 272  Q
    |||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||    
T  5922978 taccctgcaagcaatcacaattctcagcttctttcctaacaacatcaagaacagaatcaataagctcagcgccttcagtataatgccctttagcccagtt 5923077  T
Q  273 attcccagcacca 285  Q
    ||| |||||||||    
T  5923078 attaccagcacca 5923090  T

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Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 173 - 285
Target Start/End: Original strand, 5936387 - 5936499
Alignment:
Q  173 taccttgcaagcaatcacaattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaatt 272  Q
    |||| |||||||||||||  || ||||||||||| | ||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||| ||    
T  5936387 taccctgcaagcaatcactgttttcagcttctttcctaacaacatcaagaacagaatcaataagctcagcgccttcagtgtaatgtcctttagcccagtt 5936486  T
Q  273 attcccagcacca 285  Q
    ||| |||||||||    
T  5936487 attaccagcacca 5936499  T

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Target: chr4; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 173 - 295
Target Start/End: Original strand, 38178777 - 38178899
Alignment:
Q  173 taccttgcaagcaatcacaattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaatt 272  Q
    |||||||||||||||| ||||||||||| ||||| |  |||||||| | ||| |||||||| | |||||| |||||||| ||||||||||| ||||||||    
T  38178777 taccttgcaagcaatcgcaattctcagcctctttcctcacaacatccaaaacggaatcaatcaactcagcgccttcggtgtaatgacctttcgcccaatt 38178876  T
Q  273 attcccagcaccagactgaccga 295  Q
    ||| || ||||| ||||||||||    
T  38178877 atttccggcaccggactgaccga 38178899  T

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Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 173 - 281
Target Start/End: Original strand, 40919556 - 40919664
Alignment:
Q  173 taccttgcaagcaatcacaattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaatt 272  Q
    ||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| || ||||| ||||||||||||||    
T  40919556 taccttgcaagcagtcgcaattctcagcttcttttcgaacaacatcaagaacagaatcaataagttcagctccttcagtgtaatgtcctttagcccaatt 40919655  T
Q  273 attcccagc 281  Q
    ||| |||||    
T  40919656 attaccagc 40919664  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 290
Target Start/End: Complemental strand, 45319506 - 45319388
Alignment:
Q  172 ttaccttgcaagcaatcacaattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaat 271  Q
    ||||||||||||||||||||||||||| | || || |  ||||||||||||||| | ||||| ||||| ||||| || || |||||||| || ||  |||    
T  45319506 ttaccttgcaagcaatcacaattctcaacctccttccttacaacatcaagaacaaagtcaatgagctcggcaccctcagtgtaatgacccttggcgaaat 45319407  T
Q  272 tattcccagcaccagactg 290  Q
    | || || |||||||||||    
T  45319406 tgtttccggcaccagactg 45319388  T

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Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 184 - 295
Target Start/End: Complemental strand, 34839953 - 34839842
Alignment:
Q  184 caatcacaattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaattattcccagcac 283  Q
    ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||| || ||||||||||| |||||||| || || || |    
T  34839953 caatcgcaattctcagcttctttacgaacaacatcgagaactgaatcaataagttcagcgccttcagtgtaatgacctttcgcccaattgttaccggcgc 34839854  T
Q  284 cagactgaccga 295  Q
    | ||||||||||    
T  34839853 cggactgaccga 34839842  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 290
Target Start/End: Original strand, 45454432 - 45454538
Alignment:
Q  184 caatcacaattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcaccttcggtataatgacctttagcccaattattcccagcac 283  Q
    ||||||||||||||||| || || |  ||||||||||| || |||||||| | |||||| ||||| ||||| |||||||| ||||| || || || ||||    
T  45454432 caatcacaattctcagcctccttcctgacaacatcaagcaccgaatcaatcaactcagctccttctgtatagtgacctttcgcccagttgtttccggcac 45454531  T
Q  284 cagactg 290  Q
    | |||||    
T  45454532 cggactg 45454538  T

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