View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11026_low_4 (Length: 310)
Name: NF11026_low_4
Description: NF11026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11026_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 53598585 - 53598876
Alignment:
| Q |
1 |
atagggtatcgtacattataagttatggtacatgttggcgcttctaagtgaatcttgcattccagtaatattgtacatggcttatcatgttatatagaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53598585 |
atagggtatcgtacattataagttatggtacatgttggcgcttctaagtgaatcttgcattccagtaatattgtacatggcttatcatgttatatagaga |
53598684 |
T |
|
| Q |
101 |
gggtggtgactttccatgcaaaacgcacnnnnnnntaaacatataatcatgagtgggagaattatggagaaattgaatatgtatgggttgagccatctct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53598685 |
gggtggtgactttccatgcaaaacgcacaaaaaaataaacatataatcatgagtgggagaattatggagaaattgaatatgtatgggttgagccatctct |
53598784 |
T |
|
| Q |
201 |
tcatgactgtctttcttcataacttatcgacattcatggtgcaaccagcaatcaccgatgtaacaatggctgctctttgtcccggacaagat |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53598785 |
tcatgactgtctttcttcataacttatcgacattcatggtgcaaccagcaatcaccgatgtaacaatggctgctctttgtcccggacaagat |
53598876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University