View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11026_low_7 (Length: 228)
Name: NF11026_low_7
Description: NF11026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11026_low_7 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 40551822 - 40552043
Alignment:
| Q |
7 |
aaacaaagacatgaatgcgaaataaccatgcataagagtacagatttaagtatgtaaatttgtcgccctatcccaatgttagagtaatctaaacaactga |
106 |
Q |
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| T |
40551822 |
aaacaaagatatgaatgcgaaataaccatgcataagagtacagatttaagtatgtaaatttgtcgccctatcccaatgttagagtgatctaaacaactga |
40551921 |
T |
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| Q |
107 |
aaacaataataccactgaactactgaaacaatccgtatatgattaatttttcaaaaactgcacacgtataatttagtttaaaaattgccctaggaaaaga |
206 |
Q |
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| T |
40551922 |
aaacaataataccacagaactactgaaacaatccgtatatgattaatttttcaaaaactgcacacgtataatttagtttaaaaattgccctaggaaaaga |
40552021 |
T |
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| Q |
207 |
taaataggcgcaaggcaagaac |
228 |
Q |
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| T |
40552022 |
taaataagcgcaaggcaagaac |
40552043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 40569110 - 40569173
Alignment:
| Q |
124 |
aactactgaaacaatccgtatatgattaatttttcaaaaactgcacacgtataatttagtttaaaa |
189 |
Q |
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| T |
40569110 |
aactactgaaacagtcggtatatgactaatttttcaaaaactgcata--tataatttagtttaaaa |
40569173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 36 - 152
Target Start/End: Original strand, 15110423 - 15110539
Alignment:
| Q |
36 |
gcataagagtacagatttaagtatgtaaatttgtcgccctatcccaatgttagagtaatctaaacaactgaaaacaataataccactgaactactgaaac |
135 |
Q |
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| T |
15110423 |
gcataagagtacaaatgtaagtacgtaaatttgtcaccctatcccaattttagagtaatccgaacaaccaaaaacaataataccacaaaactattaaaac |
15110522 |
T |
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| Q |
136 |
aatccgtatatgattaa |
152 |
Q |
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| T |
15110523 |
aatccgtatataattaa |
15110539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 7 - 118
Target Start/End: Complemental strand, 15110006 - 15109895
Alignment:
| Q |
7 |
aaacaaagacatgaatgcgaaataaccatgcataagagtacagatttaagtatgtaaatttgtcgccctatcccaatgttagagtaatctaaacaactga |
106 |
Q |
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|||| |||| ||||||| |||||| ||| | | |||||||| ||||||||| ||||||||||| |||||||||||||||||||||||| ||||||| | |
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| T |
15110006 |
aaacgaagagatgaatgtgaaatatccactcgttagagtacaaatttaagtacgtaaatttgtcaccctatcccaatgttagagtaatccaaacaaccaa |
15109907 |
T |
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| Q |
107 |
aaacaataatac |
118 |
Q |
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| T |
15109906 |
aaacaagaatac |
15109895 |
T |
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