View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11027_high_11 (Length: 333)
Name: NF11027_high_11
Description: NF11027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11027_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 14 - 323
Target Start/End: Original strand, 41679789 - 41680098
Alignment:
| Q |
14 |
ataatcacttgatagaaaattttctctccaagattggtgacctaggtttactttaacacaccagnnnnnnnnnnnngactatcaagaaaggatgaaatga |
113 |
Q |
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| T |
41679789 |
ataatcacttgatagaaaattttctctccaagattggtgacctaggtttactttaacacaccagaaaaaagaaaaagactacaaagaaaggatgaaataa |
41679888 |
T |
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| Q |
114 |
acgatggattgcgaaataacctgaaattccaacggctatgccttcaaaaaccgaatgaaaacaaagtgcaagaataagcaaaatagtatctcccacatta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41679889 |
acgatggattgcgaaataacctgaaattccaacggctatgccttcaaaaaccgaatgaaaacaaagtgcaagaataagcaaaatagtatctcccacatta |
41679988 |
T |
|
| Q |
214 |
gtagtcttcataaatgcaacgttgctctcatccatcgccaactcggtcgttccctcttcttcttgaggtgttcttcctccttcaagttcctcaactttag |
313 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41679989 |
gtagtcttcatgaatgcaacgttgctctcatccatcgccaactcggtcgttccctcttcttcttgaggtgttcttcctccttcaagttcctcaactttag |
41680088 |
T |
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| Q |
314 |
cttctctctg |
323 |
Q |
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|||| ||||| |
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| T |
41680089 |
cttccctctg |
41680098 |
T |
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