View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11027_high_13 (Length: 240)
Name: NF11027_high_13
Description: NF11027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11027_high_13 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 11022299 - 11022075
Alignment:
| Q |
18 |
gtttgatgtttatactaggccagcctccaatgcaagaatgaatgccacaggtattctattatattttctgcaaaattgaataagtgaaatttaataaacc |
117 |
Q |
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| T |
11022299 |
gtttgatgtttatactaggccagcctccaatgcaagaatgaatgccacaggtattctattatattttctgcaaaattgaataagtgaaatttaataaacc |
11022200 |
T |
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| Q |
118 |
ataaattgaattcatttagcaatttttgaggg--aaaaaatgtaagtttcagggatcgtaaattcaaagatataaggatgaaactttaagaatacttcca |
215 |
Q |
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| T |
11022199 |
ataaattgaattcatttagcaacttttgaggggaaaaaaatgtaagtttcagggatcgtaaattcaaagatataaggatgaaactttaagaatacttcca |
11022100 |
T |
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| Q |
216 |
gaaggaaacttttgccaatcttttt |
240 |
Q |
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| T |
11022099 |
gaaggaaacttttgccaatcttttt |
11022075 |
T |
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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 88 - 155
Target Start/End: Original strand, 9122742 - 9122809
Alignment:
| Q |
88 |
caaaattgaataagtgaaatttaataaaccataaattgaattcatttagcaatttttgagggaaaaaa |
155 |
Q |
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| T |
9122742 |
caaaattgaatgagtggaatgtaataaaccctaatttgaagtcatttagcaatttttgtgggaaaaaa |
9122809 |
T |
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