View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11027_high_4 (Length: 493)
Name: NF11027_high_4
Description: NF11027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11027_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 17 - 484
Target Start/End: Complemental strand, 44646995 - 44646528
Alignment:
| Q |
17 |
ttaaaagcttgctgaagcagaattgagaacattcaattcatgtttctggtgataaatcaacatcattgatttaagttttgtcatatatattcatggatat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44646995 |
ttaaaagcttgctgaagcagaattgagaacattcaattcatgtttctggtgataaatcaacatcattgatttaagttttgtcatatatattcatggatat |
44646896 |
T |
|
| Q |
117 |
agtaaactgtgctatttgatcctttttatacaatccatcttaaacagaacctgaaggttcctttccattcactaacatatggatagtttattttccattt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44646895 |
agtaaactgtgctatttgatcctttttatacaatccatcttaaacagaacctgaaggttcctttccattcactaacacatggatagtttattttccattt |
44646796 |
T |
|
| Q |
217 |
gcaaaactagtacactgaaaaagttatattaggattattggctttgtatgtgcttatgactgattattaactatgatcacaaaattgttgaaatatctat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44646795 |
gcaaaactagtacactgaaaaagttatattaggattattggctttgtatgtgcttatgactgattattaactatgatcacaaaattgttgaaatatctat |
44646696 |
T |
|
| Q |
317 |
ctatttatactatttaatttctgaagcgcctgcgattggatttatcatatattttctgaaggcagaaagtgcctcctccgattcctaacactttctgcct |
416 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44646695 |
ctatttatactatttaatttctgaaccgcctgcgattggatttatcatatattttctgaaggcagaaagtgcctcctccgattcctaacactttctgcct |
44646596 |
T |
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| Q |
417 |
tctccgattccttgacggctctctcacactattttaataatctgaatgtgaagaaaaccagcctttgc |
484 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44646595 |
tctccgattccttgacggctctctcacactattttaataatctgaatgtgaagaaaaccagcctttgc |
44646528 |
T |
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