View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11027_low_1 (Length: 591)
Name: NF11027_low_1
Description: NF11027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11027_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 519; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 19 - 584
Target Start/End: Complemental strand, 38568114 - 38567540
Alignment:
| Q |
19 |
ctgccatggctgtaatcataggcaggatggcttctaaaggtcaaactgcttatgcaaaagctgcacatgttgttgaacagacaattggctcaataagaac |
118 |
Q |
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| T |
38568114 |
ctgccatggctgtaatcataggcaggatggcttctaaaggtcaaactgcttatgcaaaagctgcgcatgttgttgaacagacaattggctcaataagaac |
38568015 |
T |
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| Q |
119 |
ggtatgttgtcagaagtaaatttgcaaacttc---------taagtgtgagtttggttctacagtaacaaaaattgactgtggctaaaaattgaacgtaa |
209 |
Q |
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| T |
38568014 |
ggtatgttgtcagaagtaaatttgcaaacttcaataacttctaagtgtgagtttggttctgcagtaacaaaaattgactgtggctaaaagttgaacgtaa |
38567915 |
T |
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| Q |
210 |
aattcatgcaaaagtgtgttgaacaataattttgaggtttaaaagtgggtcaaaatcaactatatttgataacatccaaacatatcaaattcatttctac |
309 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38567914 |
aattcatgcaaaagtgtgttgaacaataaatttgaggtttaaaagtgggtcaaaatcaactatatttgataacatccaaacatatcaaattcatttctac |
38567815 |
T |
|
| Q |
310 |
acttctaaaattaattttgcctcagtccagtagtggaacgaaacatacatgttgctttttattttcttgctgcttatgtgtggcagtgctatgataaaca |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38567814 |
acttctaaaattaattttgcctcagtccagtagtggaacgaaacatacatgttgctttttattttcttgctgcttatgtgtggcagtgctatgataaaca |
38567715 |
T |
|
| Q |
410 |
tgtagcctaatttccttcctcatgttgtgtgtattttcaggttgcttcctttactggtgaaaagcaagcagtagctaattacagcaaacatcttgtagat |
509 |
Q |
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| T |
38567714 |
tgtagcctaacttccttcctcgtgttgtgtgtattttcaggttgcttcctttactggtgaaaagcaagcagtagctaattacagcaaacatcttgtagat |
38567615 |
T |
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| Q |
510 |
ggttacaaatcaggagtttttgaaggttttatatctggagtaggtgtaggcacatttatgtttcttatgttccta |
584 |
Q |
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| T |
38567614 |
ggttacaaatcaggagtttttgaaggttttatatctggagtaggtgtaggcacatttatgtttcttatgttccta |
38567540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 38526973 - 38526859
Alignment:
| Q |
19 |
ctgccatggctgtaatcataggcaggatggcttctaaaggtcaaactgcttatgcaaaagctgcacatgttgttgaacagacaattggctcaataagaac |
118 |
Q |
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| T |
38526973 |
ctgccatggctgttatcataggcagaatggcttctaaaggtcaaactgcttatgcaaaagctgcacatgttgttgaacagaccattggctcaataagaac |
38526874 |
T |
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| Q |
119 |
ggtatgttgtcagaa |
133 |
Q |
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|||||| ||| |||| |
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| T |
38526873 |
ggtatgctgttagaa |
38526859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 434 - 577
Target Start/End: Complemental strand, 38526562 - 38526419
Alignment:
| Q |
434 |
ttgtgtgtattttcaggttgcttcctttactggtgaaaagcaagcagtagctaattacagcaaacatcttgtagatggttacaaatcaggagtttttgaa |
533 |
Q |
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|||||| |||||||||||||| ||||||||||| ||||||||||||||| ||| ||| |||||| ||||||||||| |||||||||||||||||||||| |
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| T |
38526562 |
ttgtgtatattttcaggttgcatcctttactggggaaaagcaagcagtatctagttatagcaaatttcttgtagatgcttacaaatcaggagtttttgaa |
38526463 |
T |
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| Q |
534 |
ggttttatatctggagtaggtgtaggcacatttatgtttcttat |
577 |
Q |
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||| |||| |||||| ||| |||||||| |||||||| |||| |
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| T |
38526462 |
ggtactatagctggagcaggactaggcacagttatgtttgttat |
38526419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 361
Target Start/End: Original strand, 10859936 - 10860016
Alignment:
| Q |
280 |
aacatccaaacatatcaaattcatttctacacttctaaaattaattttgcctcagtccagtagtggaacgaaacatacatgt |
361 |
Q |
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| T |
10859936 |
aacattcaaacaggtcaaaatcatttctacacctctataatgaattttgcctc-ttccaaaagtggaaccaaacatacatgt |
10860016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 333
Target Start/End: Complemental strand, 7263060 - 7262988
Alignment:
| Q |
261 |
aaaatcaactatatttgataacatccaaacatatcaaattcatttctacacttctaaaattaattttgcctca |
333 |
Q |
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|||||||| |||| | || ||||||| || || ||||| ||| ||||||||||||| ||| |||||||||||| |
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| T |
7263060 |
aaaatcaattatactcgagaacatcctaaaatgtcaaaatcaattctacacttctagaatcaattttgcctca |
7262988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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