View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11027_low_11 (Length: 333)
Name: NF11027_low_11
Description: NF11027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11027_low_11 |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-169; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 13 - 316
Target Start/End: Original strand, 33990235 - 33990538
Alignment:
| Q |
13 |
cagagaagaaatcaagactctattagaagaaaatgatgcagaagaaagtgcatgcaaatgttcttctgagaatgattcctatgttgttgatgagaaccaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33990235 |
cagagaagaaatcaagactctattagaagaaaatgatgcagaagaaagtgcatgcaaatgttcttctgagaatgattcctatgttgttgatgagaaccaa |
33990334 |
T |
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| Q |
113 |
tctcttattgtaaatgatgttgaagagacactttataaggccagagaaattcttgagcttctcaactatgaaacttttgaacacaaattcaatgaagcta |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33990335 |
tctcttattgtaaatgatgttgaagagacactttataaggccagagaaattcttgagcttctcaactatgaaacttttgaacacaaattcaatgaagcta |
33990434 |
T |
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| Q |
213 |
aaccacctttcaagcatcctttcgatgttcctgaaaatccaaaattcactgttgggttggatataccatttagcaagttgaaaatggagcttataaggga |
312 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33990435 |
aaccacctttcaagcgtcctttcgatgttcctgaaaatccaaaattcactgttgggttggatataccatttagcaagttgaaaatggagcttataaggga |
33990534 |
T |
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| Q |
313 |
tggt |
316 |
Q |
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|||| |
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| T |
33990535 |
tggt |
33990538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 13 - 304
Target Start/End: Original strand, 33950759 - 33951041
Alignment:
| Q |
13 |
cagagaagaaatcaagactctattagaagaaaatgatgcagaagaaagtgcatgcaaatgttcttctgagaatgattcctatg------ttgttgatgag |
106 |
Q |
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|||||||||||| || | ||| |||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||| ||||||| ||| |
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| T |
33950759 |
cagagaagaaataaatagtctgatagaagaaaatgatgcaggagaaagtgcatgtacatgttcttctgagaatgattcctatggctatgttgttgaggag |
33950858 |
T |
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| Q |
107 |
aaccaatctcttattgtaaatgatgttgaagagacactttataaggccagagaaattcttgagcttctcaactatgaaacttttgaacacaaattcaatg |
206 |
Q |
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| T |
33950859 |
aaccaatctcttactgtaaatgatgttgaagagacgctttataagaccagagaaattcttgagcttctcaaccatgaa---------------ttcaatg |
33950943 |
T |
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| Q |
207 |
aagctaaaccacctttcaagcatcctttcgatgttcctgaaaatccaaaattcactgttgggttggatataccatttagcaagttgaaaatggagctt |
304 |
Q |
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||| | || || |||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33950944 |
aagatggacaacttttcaagcgtcctttcaatgttcctgaaaatcaaaaattcactgttgggttggatataccatttagcaagttgaaaatggagctt |
33951041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 13 - 178
Target Start/End: Original strand, 33959406 - 33959571
Alignment:
| Q |
13 |
cagagaagaaatcaagactctattagaagaaaatgatgcagaagaaagtgcatgcaaatgttcttctgagaatgattcctatgttgttgatgagaaccaa |
112 |
Q |
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|||||| ||||| || | |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33959406 |
cagagaggaaataaatagtctaatagaagaaaatgatgcaggagaaagtgcatgcaaatgttcttctgagaatgattcctatgttgttgatgagaaccaa |
33959505 |
T |
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| Q |
113 |
tctcttattgtaaatgatgttgaagagacactttataaggccagagaaattcttgagcttctcaac |
178 |
Q |
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| T |
33959506 |
tctcttattgtaaatgatgttgaagaaacactttataagccaagagaaattcttgagcttctcaac |
33959571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 52 - 178
Target Start/End: Original strand, 33973447 - 33973573
Alignment:
| Q |
52 |
agaagaaagtgcatgcaaatgttcttctgagaatgattcctatgttgttgatgagaaccaatctcttattgtaaatgatgttgaagagacactttataag |
151 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
33973447 |
agaagaaagtgcatgcaaatcttcttttgagaatgattcctacgttgttgatgagaaccaatctcttattgtaaatgatgtcgaagagacactttacaag |
33973546 |
T |
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| Q |
152 |
gccagagaaattcttgagcttctcaac |
178 |
Q |
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||||||||||||||||||||||||||| |
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| T |
33973547 |
gccagagaaattcttgagcttctcaac |
33973573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 245 - 304
Target Start/End: Original strand, 33973577 - 33973636
Alignment:
| Q |
245 |
gaaaatccaaaattcactgttgggttggatataccatttagcaagttgaaaatggagctt |
304 |
Q |
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| T |
33973577 |
gaaaatccaaaattcactgttgggttggatataccatttagcaagttgaaaatggagctt |
33973636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 85 - 303
Target Start/End: Original strand, 10335 - 10556
Alignment:
| Q |
85 |
tgattcctatgttgttgatgagaaccaatctcttattgtaaatgatgttgaagagacactttataaggccagagaaattcttgagcttctcaactatgaa |
184 |
Q |
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|||||||||||| |||||||| ||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||| ||||| ||| | ||| |
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| T |
10335 |
tgattcctatgtcgttgatgataaccaatctcttacggtaaatgatgttaaagagacactttacaaggccagagaaattcttgaacttcttaacaaggaa |
10434 |
T |
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| Q |
185 |
acttttgaacacaaattcaatgaagctaaaccacc---tttcaagcatcctttcgatgttcctgaaaatccaaaattcactgttgggttggatataccat |
281 |
Q |
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| ||||||||| ||||| |||||| | |||||| |||||| |||||| | |||||| ||||||||| |||||| ||||||| | |||||||||| |
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| T |
10435 |
aattttgaacagaaatttaatgaaaatggaccaccaatattcaagggtccttttggtgttccagaaaatccagaattcattgttgggattgatataccat |
10534 |
T |
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| Q |
282 |
ttagcaagttgaaaatggagct |
303 |
Q |
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|||||||||||||||||||||| |
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| T |
10535 |
ttagcaagttgaaaatggagct |
10556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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