View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11027_low_13 (Length: 331)
Name: NF11027_low_13
Description: NF11027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11027_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 15 - 315
Target Start/End: Complemental strand, 33093596 - 33093296
Alignment:
| Q |
15 |
gacatttatagacaccaaatcgcgaagatatggatacaacattgaggagttgtcatcatcattcaaaaactttgccttttgaagatttagatgctgcaca |
114 |
Q |
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| T |
33093596 |
gacatttatagacaccaaatcgcgaagatatggatacaacattgaggagttgtcatcatcattcaaaaactttgcattttgaagatttagatgctgcaca |
33093497 |
T |
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| Q |
115 |
aatctacactttgacaagaaataagagatcccgaaatatgtatattcgcagcaatcttgaaggacaaggttccttaaaggaagatcttcatttgctacac |
214 |
Q |
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| T |
33093496 |
aatctacactttgacaagaaataagagatcccgaaatatgtatattcgcagcaatcttgaaggacaaggttccttaaaggaagatcttcatttgctacag |
33093397 |
T |
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| Q |
215 |
atataagcatatcatcagtaacacatgaaagtgacaaatcaagatgggttaagtgtttcaaactcaccaacgaatcaatgaagtatgaagtaacattttt |
314 |
Q |
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| T |
33093396 |
agataagcatatcatcagtaacacatgaaagtgacaaatcaagatgggttaagtgtttcaaactcaccaacgaatcaatgaagtatgaagtaacattttt |
33093297 |
T |
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| Q |
315 |
g |
315 |
Q |
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| T |
33093296 |
g |
33093296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 72 - 313
Target Start/End: Complemental strand, 33708626 - 33708385
Alignment:
| Q |
72 |
atcattcaaaaactttgccttttgaagatttagatgctgcacaaatctacactttgacaagaaataagagatcccgaaatatgtatattcgcagcaatct |
171 |
Q |
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| T |
33708626 |
atcattcaaaaactttgcacgttgaatatctagatgctgcagagatcgacactttgacaagaaacaagagataccggtataagtatattggcagcgacct |
33708527 |
T |
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| Q |
172 |
tgaaggacaaggttccttaaaggaagatcttcatttgctacacatataagcatatcatcagtaacacatgaaagtgacaaatcaagatgggttaagtgtt |
271 |
Q |
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| T |
33708526 |
tggaggacaagtttcctcaaaggaagagctgcaagtgttagagagtaaagcaacgaatcagtaatgcatgaataggacaaatcaagacaagttaagcgct |
33708427 |
T |
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| Q |
272 |
tcaaactcaccaacgaatcaatgaagtatgaagtaacatttt |
313 |
Q |
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| T |
33708426 |
tcaaactcatcaatgaatcaatgaagcacgaagtaacatttt |
33708385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 204
Target Start/End: Complemental strand, 36810625 - 36810493
Alignment:
| Q |
72 |
atcattcaaaaactttgccttttgaagatttagatgctgcacaaatctacactttgacaagaaataagagatcccgaaatatgtatattcgcagcaatct |
171 |
Q |
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| T |
36810625 |
atcattcaaaaactttgcatcttgaagatctagaagctgtagaaatcgacactttgacagtagataagagatcccatgatatgtataattgaagcaatct |
36810526 |
T |
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| Q |
172 |
tgaaggacaaggttccttaaaggaagatcttca |
204 |
Q |
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| T |
36810525 |
tggaggataagttccctcaaaggaagagcttca |
36810493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 143
Target Start/End: Complemental strand, 33714461 - 33714390
Alignment:
| Q |
72 |
atcattcaaaaactttgccttttgaagatttagatgctgcacaaatctacactttgacaagaaataagagat |
143 |
Q |
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| T |
33714461 |
atcattcaaaaactttgcacattgaagatctagatgctgcagagatcgacaatttgacaagaaacaagagat |
33714390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 72 - 195
Target Start/End: Complemental strand, 37580429 - 37580306
Alignment:
| Q |
72 |
atcattcaaaaactttgccttttgaagatttagatgctgcacaaatctacactttgacaagaaataagagatcccgaaatatgtatattcgcagcaatct |
171 |
Q |
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||||||||||||| |||| ||||||| || |||||||| || || |||||||||||| |||||| | ||||| ||||||| || | | |||||||| |
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| T |
37580429 |
atcattcaaaaacgttgctttttgaatatctagatgcttcagtgattgacactttgacaataaataatatatcccagaatatgtgtagttggagcaatct |
37580330 |
T |
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| Q |
172 |
tgaaggacaaggttccttaaagga |
195 |
Q |
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| T |
37580329 |
ttgaggacaagtttcctcaaagga |
37580306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 313
Target Start/End: Complemental strand, 33714317 - 33714251
Alignment:
| Q |
247 |
gacaaatcaagatgggttaagtgtttcaaactcaccaacgaatcaatgaagtatgaagtaacatttt |
313 |
Q |
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|||||||||||| |||||| | || ||||||||||| |||||||||||||| |||||||||||| |
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| T |
33714317 |
gacaaatcaagacaagttaagcgctttaaactcaccaatgaatcaatgaagtacaaagtaacatttt |
33714251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 75 - 147
Target Start/End: Complemental strand, 18723944 - 18723872
Alignment:
| Q |
75 |
attcaaaaactttgccttttgaagatttagatgctgcacaaatctacactttgacaagaaataagagatcccg |
147 |
Q |
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||||||||| |||| |||| ||||| |||||| |||| ||||| |||||||||||||| ||||||||||||| |
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| T |
18723944 |
attcaaaaagattgcattttaaagatctagatgttgcagaaatcgacactttgacaagagataagagatcccg |
18723872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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