View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11027_low_14 (Length: 241)
Name: NF11027_low_14
Description: NF11027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11027_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 31729417 - 31729192
Alignment:
| Q |
1 |
ctgtttatatttcagtccgaggtagatttttacaaattaatggataattaatttagctggcatgccagagactttaatgtaatgcagtttaaaagttata |
100 |
Q |
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| T |
31729417 |
ctgtttatatttcagtccgaggtagattt---------aatggataattaatttagctggcatgccagagactttaatgtaatgcagtttaaaagttata |
31729327 |
T |
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| Q |
101 |
ttgtgaaagctgaagggttgaaccataattcttgtatattttatgattgtggatttgtattttaattgc----nnnnnnnnnnnngagtcaagattggta |
196 |
Q |
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| T |
31729326 |
ttgtgaaagctgaagggttgaaccataattcttgtatattttatgattgtggatttgtattttaattgcttttttttttttttttgagtcaagattggta |
31729227 |
T |
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| Q |
197 |
gttgtgcgattctgatccggattatagtatctctg |
231 |
Q |
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| T |
31729226 |
gttgtgcgattctgatccggattatagtatctctg |
31729192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 51637258 - 51637144
Alignment:
| Q |
1 |
ctgtttatatttcagtccgaggtagatttttacaaattaatggataattaatttagctggcatgccagagactttaatgtaatgcagtttaaaagttata |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| || ||||||||||||||||||| |
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| T |
51637258 |
ctgtttatatttcagtccgaggtagatttttacaaattaatggatgattaatttaggtggcatgccagagactttaacgtcatgcagtttaaaagttata |
51637159 |
T |
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| Q |
101 |
ttgtgaaagctgaag |
115 |
Q |
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|||||||||| |||| |
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| T |
51637158 |
ttgtgaaagcagaag |
51637144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 51636762 - 51636713
Alignment:
| Q |
182 |
gagtcaagattggtagttgtgcgattctgatccggattatagtatctctg |
231 |
Q |
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|||| ||||| ||||||||||| ||||||| ||||||||||| ||||||| |
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| T |
51636762 |
gagtgaagatgggtagttgtgcaattctgacccggattatagcatctctg |
51636713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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