View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11027_low_17 (Length: 239)
Name: NF11027_low_17
Description: NF11027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11027_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 31729420 - 31729641
Alignment:
| Q |
1 |
cgacaaggaagcttacgaacaggacaaacttgacaaagtgatctatcagatccggtaacattcttataagtgcctgttaccagatcctagacatgcattt |
100 |
Q |
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| T |
31729420 |
cgacaaggaagctcacgaacaggacaaacttgacaaagtgatctatcagatccggtaacattcttgtaagtgcctgttaccagatcctagacatggattt |
31729519 |
T |
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| Q |
101 |
ggtttataattagttagtcacgcataaggaaccttctgccacaacgtcttcacttatttcctatcctgatagtatgcataaaacattttttcgatacatc |
200 |
Q |
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| T |
31729520 |
ggtttataattagttagtcacgcataaggaaccttctgccacaacgtcttcacttatttcctatcctgatagtgtgcataaaacattttttcgatacatc |
31729619 |
T |
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| Q |
201 |
tttaactagttgtatagtttta |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
31729620 |
tttaactagttgtatagtttta |
31729641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 75 - 222
Target Start/End: Original strand, 51637985 - 51638129
Alignment:
| Q |
75 |
tgttaccagatcctagacatgcatttggtttataattagttagtcacgcataaggaaccttctgccacaacgtcttcacttatttcctatcctgatagta |
174 |
Q |
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||||||||| |||||| |||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
51637985 |
tgttaccagttcctaggcatgtatttggtttataattggttagtcacacataaggaaccttctgccacaacgtcttcacttatttccaatcctgataata |
51638084 |
T |
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| Q |
175 |
tgcataaaacattttttcgatacatctttaactagttgtatagtttta |
222 |
Q |
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| T |
51638085 |
tgc---agacattttttcagtacagctttaactagtcgtatagtttta |
51638129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 51637261 - 51637336
Alignment:
| Q |
1 |
cgacaaggaagcttacgaacaggacaaacttgacaaagtgatctatcagatccggtaacattcttataagtgcctg |
76 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||| |
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| T |
51637261 |
cgacgaggaagcttgtgaacaggacaaacttgacaaagtgatctatcagatcccgtgacattcttgtaagtgcctg |
51637336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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