View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11027_low_2 (Length: 586)

Name: NF11027_low_2
Description: NF11027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11027_low_2
NF11027_low_2
[»] chr3 (1 HSPs)
chr3 (1-576)||(29337435-29337998)
[»] chr7 (4 HSPs)
chr7 (145-223)||(28020944-28021022)
chr7 (307-354)||(28542032-28542079)
chr7 (147-237)||(41948498-41948588)
chr7 (108-204)||(39811900-39811996)
[»] chr2 (4 HSPs)
chr2 (312-437)||(8197548-8197671)
chr2 (312-437)||(8202308-8202431)
chr2 (311-354)||(18959062-18959105)
chr2 (317-354)||(19336981-19337018)
[»] chr8 (2 HSPs)
chr8 (312-421)||(3645238-3645345)
chr8 (312-353)||(17491743-17491784)
[»] chr5 (2 HSPs)
chr5 (74-200)||(219700-219826)
chr5 (312-368)||(28186851-28186905)
[»] chr4 (4 HSPs)
chr4 (312-437)||(25755468-25755591)
chr4 (301-354)||(31459135-31459188)
chr4 (313-373)||(32339712-32339770)
chr4 (179-227)||(38903940-38903988)
[»] chr1 (1 HSPs)
chr1 (147-223)||(38868864-38868940)


Alignment Details
Target: chr3 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 1 - 576
Target Start/End: Complemental strand, 29337998 - 29337435
Alignment:
Q  1 tgaagataaaattttattgtacatccgttagacccgtgatgttgtatgtggtaaaaaaccatcgcgagaataaaatacgcgtagtaaagatgagaatact 100  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29337998 tgaagataaaattttattgtacagccgttagacccgcgatgttgtatgtggtaaaaaaccatcgcgagaataaaatacgcgtagtagagatgagaatact 29337899  T
Q  101 gtgttgaatgtgtggtaagataagacgtgataagatagagaataataacattagagaaagagttgaggtagcacttaccatagaaacgatggtggaaact 200  Q
    ||||||         |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29337898 gtgttg---------taagataagacgtgataagatagagaataataccattagagaaagagttgaggtagcacttaccgtagaaacgatggtggaaact 29337808  T
Q  201 cggcatagatgctttgtgcatgtggaggaaagacctcatgtggattgtgtaggaactaggaagaatagtagaccagatcatggagggtagtcaaattgca 300  Q
    ||| ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29337807 cggtatagatgctttgtgcatgtggaggaaagacct---gtggattgtgtaggaactaggaagaatagtagaccagatcatggagggtagtcaaattgca 29337711  T
Q  301 aaaggtagaccaagaaaaactataaagaaagacttcgagattaatgagttggatatagagatatgatatatgacggaatattatattgtcgtttggtcct 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  29337710 aaaggtagaccaagaaaaactataaagaaagacttcgagattaatgagttggatatagagatatgatatatgacggaatattatatcgtcgtttggtcca 29337611  T
Q  401 tgtagccgatcctaattaatgggacaaagtttggttgctgtgttattgttgtacaacgtatgtcaaacacaaacaataatgttgagattaagttgcagac 500  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29337610 tgtagccgatcctacttaatgggacaaagtttggttgctgtgttattgttgtacaacgtatgtcaaacacaaacaataatgttgagattaagttgcagac 29337511  T
Q  501 tgcatcgctctctttaagacgtttcacggatgtgcatgaattcaacaataatatacacagtctcttcgtccttctt 576  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29337510 tgcatcgctctctttaagacgtttcacggatgtgcatgaattcaacaataatatacacagtctcttcgtccttctt 29337435  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 145 - 223
Target Start/End: Original strand, 28020944 - 28021022
Alignment:
Q  145 ataacattagagaaagagttgaggtagcacttaccatagaaacgatggtggaaactcggcatagatgctttgtgcatgt 223  Q
    ||||||||||||||||||||| ||||||||||| | |||||| ||||||||||||| ||| ||| || |||| ||||||    
T  28020944 ataacattagagaaagagttggggtagcacttatcgtagaaaagatggtggaaacttggcttaggtggtttgggcatgt 28021022  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 28542079 - 28542032
Alignment:
Q  307 agaccaagaaaaactataaagaaagacttcgagattaatgagttggat 354  Q
    ||||| ||||||||||| |||||||| || ||||||||||||||||||    
T  28542079 agacctagaaaaactattaagaaagatttagagattaatgagttggat 28542032  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 147 - 237
Target Start/End: Original strand, 41948498 - 41948588
Alignment:
Q  147 aacattagagaaagagttgaggtagcacttaccatagaaacgatggtggaaactcggcatagatgctttgtgcatgtggaggaaagacctc 237  Q
    ||||||||||  |||||||  ||||||||||| ||||||| ||||||||||||| ||| ||  || |||| |||||| |||  ||||||||    
T  41948498 aacattagagtgagagttggcgtagcacttacaatagaaaagatggtggaaactaggcttaagtggtttgggcatgtagagagaagacctc 41948588  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 204
Target Start/End: Original strand, 39811900 - 39811996
Alignment:
Q  108 atgtgtggtaagataagacgtgataagat-agagaataataacattagagaaagagttgaggtagcacttaccatagaaacgatggtggaaactcggc 204  Q
    |||||||||||||  |||||||||| ||| ||| ||| | ||||||||||| ||||||| || ||||| || ||||||||  |||||| |||||||||    
T  39811900 atgtgtggtaagactagacgtgataggattaga-aatgacaacattagagagagagttggggcagcacctatcatagaaaaaatggtgaaaactcggc 39811996  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 437
Target Start/End: Complemental strand, 8197671 - 8197548
Alignment:
Q  312 aagaaaaactataaagaaagacttcgagattaatgagttggatatagagatatgatatatgacggaatattatattgtcgtttggtccttgtagccgatc 411  Q
    |||| ||||||| ||||||||  |  ||||||||||||||||||  || |||||||||||||  |||||||||   |||||||| ||| ||||||||| |    
T  8197671 aagagaaactattaagaaagatctaaagattaatgagttggata--gaaatatgatatatgatagaatattatggcgtcgtttgatccatgtagccgacc 8197574  T
Q  412 ctaattaatgggacaaagtttggttg 437  Q
    ||| ||| ||||| || | |||||||    
T  8197573 ctacttagtgggataatgcttggttg 8197548  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 437
Target Start/End: Complemental strand, 8202431 - 8202308
Alignment:
Q  312 aagaaaaactataaagaaagacttcgagattaatgagttggatatagagatatgatatatgacggaatattatattgtcgtttggtccttgtagccgatc 411  Q
    |||| ||||||| ||||||||  |  ||||||||||||||||||  || |||||||||||||  |||||||||   |||||||| ||| ||||||||| |    
T  8202431 aagagaaactattaagaaagatctaaagattaatgagttggata--gaaatatgatatatgatagaatattatggcgtcgtttgatccatgtagccgacc 8202334  T
Q  412 ctaattaatgggacaaagtttggttg 437  Q
    ||| ||| ||||| || | |||||||    
T  8202333 ctacttagtgggataatgcttggttg 8202308  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 354
Target Start/End: Original strand, 18959062 - 18959105
Alignment:
Q  311 caagaaaaactataaagaaagacttcgagattaatgagttggat 354  Q
    ||||| ||||||||| ||||||||| ||||||||||||||||||    
T  18959062 caagagaaactataaggaaagacttggagattaatgagttggat 18959105  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 354
Target Start/End: Complemental strand, 19337018 - 19336981
Alignment:
Q  317 aaactataaagaaagacttcgagattaatgagttggat 354  Q
    |||||||||||||||| || ||||||||||||||||||    
T  19337018 aaactataaagaaagatttagagattaatgagttggat 19336981  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 421
Target Start/End: Original strand, 3645238 - 3645345
Alignment:
Q  312 aagaaaaactataaagaaagacttcgagattaatgagttggatatagagatatgatatatgacggaatattatattgtcgtttggtccttgtagccgatc 411  Q
    |||| ||||| | ||||||||| | ||||||||||||| ||||   |||||||||||| |||  |||||||||  ||||  ||| ||| |||||||||||    
T  3645238 aagagaaactgttaagaaagacctagagattaatgagtaggatg--gagatatgatatgtgatagaatattatggtgtccattgatccatgtagccgatc 3645335  T
Q  412 ctaattaatg 421  Q
    ||| ||||||    
T  3645336 ctacttaatg 3645345  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 353
Target Start/End: Complemental strand, 17491784 - 17491743
Alignment:
Q  312 aagaaaaactataaagaaagacttcgagattaatgagttgga 353  Q
    |||| ||||||| ||||||||||| |||||||||||||||||    
T  17491784 aagagaaactattaagaaagacttggagattaatgagttgga 17491743  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 200
Target Start/End: Complemental strand, 219826 - 219700
Alignment:
Q  74 aatacgcgtagtaaagatgagaatactgtgttgaatgtgtggtaagataagacgtgataagatagagaataataacattagagaaagagttgaggtagca 173  Q
    |||| |||||| ||||||||||||  || |||| ||| ||| ||||| |||||| ||||||||   |||| | |||||| |||| ||||||| |||||||    
T  219826 aataagcgtagcaaagatgagaatgttgcgttggatgcgtgttaagacaagacgagataagattacgaatgacaacattggagagagagttggggtagca 219727  T
Q  174 cttaccatagaaacgatggtggaaact 200  Q
    | || | | |||| | |||||||||||    
T  219726 cctatcgttgaaaaggtggtggaaact 219700  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 368
Target Start/End: Complemental strand, 28186905 - 28186851
Alignment:
Q  312 aagaaaaactataaagaaagacttcgagattaatgagttggatatagagatatgata 368  Q
    |||| ||||||| |||||||| || ||||||||||||||||  ||||||||||||||    
T  28186905 aagagaaactattaagaaagatttagagattaatgagttgg--atagagatatgata 28186851  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 437
Target Start/End: Original strand, 25755468 - 25755591
Alignment:
Q  312 aagaaaaactataaagaaagacttcgagattaatgagttggatatagagatatgatatatgacggaatattatattgtcgtttggtccttgtagccgatc 411  Q
    |||| ||||||| ||| ||||||| | ||||||||||||||  |||| |||||||||||| |  ||| |||||| |||| |||| ||| || || |||||    
T  25755468 aagagaaactattaagtaagacttggggattaatgagttgg--atagggatatgatatatcatagaacattatagtgtcatttgatccatgaagtcgatc 25755565  T
Q  412 ctaattaatgggacaaagtttggttg 437  Q
    | | ||||||||| || | |||||||    
T  25755566 ccatttaatgggataaggcttggttg 25755591  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 354
Target Start/End: Original strand, 31459135 - 31459188
Alignment:
Q  301 aaaggtagaccaagaaaaactataaagaaagacttcgagattaatgagttggat 354  Q
    ||||| ||||| ||||||||||| | |||||| || ||||||||||||||||||    
T  31459135 aaaggaagacctagaaaaactattaggaaagatttagagattaatgagttggat 31459188  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 373
Target Start/End: Original strand, 32339712 - 32339770
Alignment:
Q  313 agaaaaactataaagaaagacttcgagattaatgagttggatatagagatatgatatatga 373  Q
    ||||||||||| |||||| || | |||||||| |||||||  |||||||||||||||||||    
T  32339712 agaaaaactattaagaaatacctagagattaacgagttgg--atagagatatgatatatga 32339770  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 38903988 - 38903940
Alignment:
Q  179 catagaaacgatggtggaaactcggcatagatgctttgtgcatgtggag 227  Q
    |||||||| ||||||||||||||||| ||| || |||| ||||||||||    
T  38903988 catagaaaagatggtggaaactcggcttagttggtttgagcatgtggag 38903940  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 38868864 - 38868940
Alignment:
Q  147 aacattagagaaagagttgaggtagcacttaccatagaaacgatggtggaaactcggcatagatgctttgtgcatgt 223  Q
    ||||||| ||| || ||||  ||||||| || |||||||| ||||||||||||||||| ||| || |||| ||||||    
T  38868864 aacattaaagagagggttggagtagcacctatcatagaaaagatggtggaaactcggcttaggtggtttgggcatgt 38868940  T

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