View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11027_low_5 (Length: 469)
Name: NF11027_low_5
Description: NF11027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11027_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Complemental strand, 51104886 - 51104416
Alignment:
| Q |
1 |
ggtaaaaatccataggatggaacaaacttctgggggctaggtgaggacttagacaacggggaagatactgaacagacatctacatttgctgcagttgcgg |
100 |
Q |
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| T |
51104886 |
ggtaaaaatccataggatggaaaaaacttctgggggctaggtgaggacttagacaacggggaagatactgaacagacatctacatttgctgcagttgcgg |
51104787 |
T |
|
| Q |
101 |
gtagaggaacaggagacaaggttcttctaatagatgccattcatagaaataaatcctaataaataatgttcagtaactaagctccaaatgaggtcccaag |
200 |
Q |
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| T |
51104786 |
gtcgaggaacaggagacaaggttcttctaatagatgccattcatagaaataaatactgataaataatgttaagtaactcagctccaaatgaggtcccaag |
51104687 |
T |
|
| Q |
201 |
cagaaagttgggttgaacactgaaagagtgttgactaggaggtggatttaaactagaaacaaaacaaacaaacatttgactatccaaaaataaaattaac |
300 |
Q |
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|||| |||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
51104686 |
cagacagttcggttgaacactgaaagagtattgactaggaggtggattcaaactagaaacaaaa-----aaacatttgactatccaaaaataaaattaac |
51104592 |
T |
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| Q |
301 |
tccaaatgagcacaatgaat---------gtgggcataaaaacaacttgtctttcccagccaaa----------ttcattattcagcaaggaaggagttt |
381 |
Q |
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||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
51104591 |
tccaaatgaacacaatgaatgtaaacaaagtgggcataaaaacaacttgtctttcccagccaaaaaatagaaatttcattattcagcaaggaaggagttt |
51104492 |
T |
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| Q |
382 |
ggggtgaccaatatagcaagttaaggatgaaaagtggaacaagataaagtac----ctagatgacagggaagaaag |
453 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
51104491 |
ggggtgaccaatatagcaagttaaggatgaaaagtggaacaagataaagtacctatctagatgacagggaagaaag |
51104416 |
T |
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